ABK69917.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK69917.1

3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106. (231 aa)

Predicted Functional Partners:

ABK70436.1

0.844

ABK75740.1

0.809

ABK71331.1

0.771

ABK69795.1

0.750

ABK70103.1

0.738

ABK74497.1

0.730

ABK75501.1

0.726

speB

0.723

ABK70424.1

0.715

ABK70752.1

0.696

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69795.1	ABK69917.1	MSMEG_2228	MSMEG_1070	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.750
ABK69795.1	ABK70103.1	MSMEG_2228	MSMEG_4757	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.742
ABK69917.1	ABK69795.1	MSMEG_1070	MSMEG_2228	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	0.750
ABK69917.1	ABK70103.1	MSMEG_1070	MSMEG_4757	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.738
ABK69917.1	ABK70424.1	MSMEG_1070	MSMEG_6000	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Short chain dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.715
ABK69917.1	ABK70436.1	MSMEG_1070	MSMEG_1071	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.844
ABK69917.1	ABK70752.1	MSMEG_1070	MSMEG_6340	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.	0.696
ABK69917.1	ABK71331.1	MSMEG_1070	MSMEG_2918	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.	0.771
ABK69917.1	ABK74497.1	MSMEG_1070	MSMEG_2885	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.730
ABK69917.1	ABK75501.1	MSMEG_1070	MSMEG_1074	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Polysaccharide deacetylase; Identified by match to protein family HMM PF01522.	0.726
ABK69917.1	ABK75740.1	MSMEG_1070	MSMEG_1069	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Amino acid permease-associated region; Identified by match to protein family HMM PF00324.	0.809
ABK69917.1	speB	MSMEG_1070	MSMEG_1072	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.	0.723
ABK70103.1	ABK69795.1	MSMEG_4757	MSMEG_2228	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.	0.742
ABK70103.1	ABK69917.1	MSMEG_4757	MSMEG_1070	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.738
ABK70103.1	ABK70424.1	MSMEG_4757	MSMEG_6000	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Short chain dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.738
ABK70103.1	ABK70436.1	MSMEG_4757	MSMEG_1071	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.738
ABK70103.1	ABK70752.1	MSMEG_4757	MSMEG_6340	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.	0.738
ABK70103.1	ABK71331.1	MSMEG_4757	MSMEG_2918	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.	0.741
ABK70424.1	ABK69917.1	MSMEG_6000	MSMEG_1070	Short chain dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.715
ABK70424.1	ABK70103.1	MSMEG_6000	MSMEG_4757	Short chain dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.738

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About