Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69697.1 | menA | MSMEG_1925 | MSMEG_0988 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.487 |
| ABK69697.1 | menB | MSMEG_1925 | MSMEG_1075 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.855 |
| ABK69697.1 | menB-2 | MSMEG_1925 | MSMEG_4114 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Naphthoate synthase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.606 |
| ABK69697.1 | menC | MSMEG_1925 | MSMEG_1103 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB). | 0.574 |
| ABK69697.1 | menD | MSMEG_1925 | MSMEG_1109 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | 2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.979 |
| ABK69697.1 | menG | MSMEG_1925 | MSMEG_1115 | Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. | Menaquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.589 |
| ABK73246.1 | ABK74033.1 | MSMEG_1106 | MSMEG_1107 | Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. | Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965. | 0.819 |
| ABK73246.1 | ABK74778.1 | MSMEG_1106 | MSMEG_1110 | Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. | Probable conserved transmembrane protein. | 0.760 |
| ABK73246.1 | ABK75828.1 | MSMEG_1106 | MSMEG_1108 | Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. | Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561. | 0.760 |
| ABK73246.1 | menD | MSMEG_1106 | MSMEG_1109 | Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. | 2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.758 |
| ABK74033.1 | ABK73246.1 | MSMEG_1107 | MSMEG_1106 | Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965. | Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. | 0.819 |
| ABK74033.1 | ABK74778.1 | MSMEG_1107 | MSMEG_1110 | Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965. | Probable conserved transmembrane protein. | 0.802 |
| ABK74033.1 | ABK75828.1 | MSMEG_1107 | MSMEG_1108 | Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965. | Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561. | 0.806 |
| ABK74033.1 | menD | MSMEG_1107 | MSMEG_1109 | Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965. | 2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.802 |
| ABK74778.1 | ABK73246.1 | MSMEG_1110 | MSMEG_1106 | Probable conserved transmembrane protein. | Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. | 0.760 |
| ABK74778.1 | ABK74033.1 | MSMEG_1110 | MSMEG_1107 | Probable conserved transmembrane protein. | Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965. | 0.802 |
| ABK74778.1 | ABK75828.1 | MSMEG_1110 | MSMEG_1108 | Probable conserved transmembrane protein. | Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561. | 0.815 |
| ABK74778.1 | menD | MSMEG_1110 | MSMEG_1109 | Probable conserved transmembrane protein. | 2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). | 0.908 |
| ABK75828.1 | ABK73246.1 | MSMEG_1108 | MSMEG_1106 | Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561. | Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. | 0.760 |
| ABK75828.1 | ABK74033.1 | MSMEG_1108 | MSMEG_1107 | Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561. | Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965. | 0.806 |
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