ABK75115.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK75115.1

Mce related protein; Identified by match to protein family HMM PF02470. (534 aa)

Predicted Functional Partners:

ABK71572.1

0.981

ABK75165.1

0.978

ABK73311.1

0.978

ABK71504.1

0.973

ABK70425.1

0.973

ABK71583.1

0.972

ABK74241.1

0.965

ABK76111.1

0.947

ABK76052.1

0.762

ABK75583.1

0.742

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70425.1	ABK71504.1	MSMEG_1146	MSMEG_1145	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.940
ABK70425.1	ABK71572.1	MSMEG_1146	MSMEG_1141	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	ABC-transporter integral membrane protein; Identified by match to protein family HMM PF02405.	0.978
ABK70425.1	ABK71583.1	MSMEG_1146	MSMEG_1142	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	ABC-transporter integral membrane protein; Identified by match to protein family HMM PF02405.	0.970
ABK70425.1	ABK73311.1	MSMEG_1146	MSMEG_1148	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Mce related protein; Identified by match to protein family HMM PF02470.	0.956
ABK70425.1	ABK74241.1	MSMEG_1146	MSMEG_1144	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.979
ABK70425.1	ABK75115.1	MSMEG_1146	MSMEG_1143	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Mce related protein; Identified by match to protein family HMM PF02470.	0.973
ABK70425.1	ABK75165.1	MSMEG_1146	MSMEG_1147	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Mce related protein; Identified by match to protein family HMM PF02470.	0.959
ABK70425.1	ABK75583.1	MSMEG_1146	MSMEG_1150	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.774
ABK70425.1	ABK76052.1	MSMEG_1146	MSMEG_6815	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Identified by match to protein family HMM TIGR01409.	0.515
ABK70425.1	ABK76111.1	MSMEG_1146	MSMEG_1149	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.962
ABK71504.1	ABK70425.1	MSMEG_1145	MSMEG_1146	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.940
ABK71504.1	ABK71572.1	MSMEG_1145	MSMEG_1141	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	ABC-transporter integral membrane protein; Identified by match to protein family HMM PF02405.	0.979
ABK71504.1	ABK71583.1	MSMEG_1145	MSMEG_1142	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	ABC-transporter integral membrane protein; Identified by match to protein family HMM PF02405.	0.971
ABK71504.1	ABK73311.1	MSMEG_1145	MSMEG_1148	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Mce related protein; Identified by match to protein family HMM PF02470.	0.963
ABK71504.1	ABK74241.1	MSMEG_1145	MSMEG_1144	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	0.937
ABK71504.1	ABK75115.1	MSMEG_1145	MSMEG_1143	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Mce related protein; Identified by match to protein family HMM PF02470.	0.973
ABK71504.1	ABK75165.1	MSMEG_1145	MSMEG_1147	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Mce related protein; Identified by match to protein family HMM PF02470.	0.966
ABK71504.1	ABK75583.1	MSMEG_1145	MSMEG_1150	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.778
ABK71504.1	ABK76052.1	MSMEG_1145	MSMEG_6815	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Identified by match to protein family HMM TIGR01409.	0.438
ABK71504.1	ABK76111.1	MSMEG_1145	MSMEG_1149	Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.	Conserved hypothetical protein.	0.961