Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70452.1 | ABK71856.1 | MSMEG_1196 | MSMEG_1952 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | 0.942 |
| ABK70452.1 | ABK72185.1 | MSMEG_1196 | MSMEG_4191 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | Conserved hypothetical protein. | 0.896 |
| ABK70452.1 | ABK73456.1 | MSMEG_1196 | MSMEG_2035 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | Amine oxidase [flavin-containing] B; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | 0.875 |
| ABK70452.1 | ABK74628.1 | MSMEG_1196 | MSMEG_0171 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | Histone deacetylase superfamily protein; Identified by match to protein family HMM PF00850. | 0.907 |
| ABK70452.1 | dnaN | MSMEG_1196 | MSMEG_0001 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.937 |
| ABK70452.1 | polA | MSMEG_1196 | MSMEG_3839 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.939 |
| ABK70452.1 | rpoA | MSMEG_1196 | MSMEG_1524 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.976 |
| ABK70452.1 | rpoB | MSMEG_1196 | MSMEG_1367 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit often mutates to generate rifampicin (Rif) resistance. Interaction with RbpA partially restores Rif-inhibited transcription; once the subunit is Rif-resistant however RbpA no longer stimulates transcription. | 0.975 |
| ABK70452.1 | rpoC | MSMEG_1196 | MSMEG_1368 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.939 |
| ABK70452.1 | rpoZ | MSMEG_1196 | MSMEG_3053 | SNF2 domain protein; Identified by match to protein family HMM PF00176. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.977 |
| ABK71856.1 | ABK70452.1 | MSMEG_1952 | MSMEG_1196 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | SNF2 domain protein; Identified by match to protein family HMM PF00176. | 0.942 |
| ABK71856.1 | dnaN | MSMEG_1952 | MSMEG_0001 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.984 |
| ABK71856.1 | polA | MSMEG_1952 | MSMEG_3839 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.994 |
| ABK71856.1 | rpoA | MSMEG_1952 | MSMEG_1524 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.672 |
| ABK71856.1 | rpoB | MSMEG_1952 | MSMEG_1367 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit often mutates to generate rifampicin (Rif) resistance. Interaction with RbpA partially restores Rif-inhibited transcription; once the subunit is Rif-resistant however RbpA no longer stimulates transcription. | 0.826 |
| ABK71856.1 | rpoC | MSMEG_1952 | MSMEG_1368 | ATP-dependent DNA helicase; Identified by match to protein family HMM PF00570; match to protein family HMM PF00580. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.733 |
| ABK72185.1 | ABK70452.1 | MSMEG_4191 | MSMEG_1196 | Conserved hypothetical protein. | SNF2 domain protein; Identified by match to protein family HMM PF00176. | 0.896 |
| ABK72185.1 | ABK74628.1 | MSMEG_4191 | MSMEG_0171 | Conserved hypothetical protein. | Histone deacetylase superfamily protein; Identified by match to protein family HMM PF00850. | 0.736 |
| ABK73456.1 | ABK70452.1 | MSMEG_2035 | MSMEG_1196 | Amine oxidase [flavin-containing] B; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | SNF2 domain protein; Identified by match to protein family HMM PF00176. | 0.875 |
| ABK73456.1 | ABK74628.1 | MSMEG_2035 | MSMEG_0171 | Amine oxidase [flavin-containing] B; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. | Histone deacetylase superfamily protein; Identified by match to protein family HMM PF00850. | 0.921 |
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