STRINGSTRING
ABK71119.1 ABK71119.1 ABK75422.1 ABK75422.1 ABK73986.1 ABK73986.1 ABK71469.1 ABK71469.1 ABK70442.1 ABK70442.1 cbiQ cbiQ eda eda eda-2 eda-2 ABK71629.1 ABK71629.1 ABK70259.1 ABK70259.1 ABK74803.1 ABK74803.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71119.1Glycosidase; Identified by match to protein family HMM PF04041. (484 aa)    
Predicted Functional Partners:
ABK75422.1
Glycosyltransferase, group I.
 
    0.958
ABK73986.1
Glycosyltransferase, group I; Identified by match to protein family HMM PF00534.
 
  
 0.955
ABK71469.1
Chitin synthase; Identified by match to protein family HMM PF00535; match to protein family HMM PF03142.
   
  
 0.819
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
   
  
 0.621
cbiQ
Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.
   
  
 0.526
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182.
   
  
 0.491
eda-2
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.
   
  
 0.486
ABK71629.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Identified by match to protein family HMM PF01081.
   
  
 0.480
ABK70259.1
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
     0.457
ABK74803.1
Alpha-mannosidase; Identified by match to protein family HMM PF01074; match to protein family HMM PF07748.
  
  
 0.451
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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