ABK72766.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK72766.1

Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740. (498 aa)

Predicted Functional Partners:

cynS

0.726

nuoM

0.719

pks

0.715

ABK71040.1

0.714

ABK70529.1

0.710

ABK73175.1

0.702

ABK73621.1

0.702

ABK75618.1

0.702

ABK76086.1

0.559

ABK73923.1

0.530

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70529.1	ABK72766.1	MSMEG_6767	MSMEG_1235	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.710
ABK70529.1	ABK73621.1	MSMEG_6767	MSMEG_4263	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Ubiquinol-cytochrome c reductase cytochrome b subunit; Identified by match to protein family HMM PF00033.	0.864
ABK70529.1	ABK75618.1	MSMEG_6767	MSMEG_5004	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	DNA repair exonuclease; Identified by match to protein family HMM PF00149.	0.703
ABK70529.1	nuoM	MSMEG_6767	MSMEG_2051	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	NADH-quinone oxidoreductase, M subunit; Identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.942
ABK70529.1	pks	MSMEG_6767	MSMEG_0408	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.966
ABK71040.1	ABK72766.1	MSMEG_1234	MSMEG_1235	Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.714
ABK72766.1	ABK70529.1	MSMEG_1235	MSMEG_6767	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.710
ABK72766.1	ABK71040.1	MSMEG_1235	MSMEG_1234	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	Taurine import ATP-binding protein TauB; Identified by match to protein family HMM PF00005.	0.714
ABK72766.1	ABK73175.1	MSMEG_1235	MSMEG_0100	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	Phosphotyrosine protein phosphatase ptpb.	0.702
ABK72766.1	ABK73621.1	MSMEG_1235	MSMEG_4263	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	Ubiquinol-cytochrome c reductase cytochrome b subunit; Identified by match to protein family HMM PF00033.	0.702
ABK72766.1	ABK73923.1	MSMEG_1235	MSMEG_0848	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	NADH ubiquinone oxidoreductase subunit 5; Identified by match to protein family HMM PF00361; match to protein family HMM PF04039.	0.530
ABK72766.1	ABK75618.1	MSMEG_1235	MSMEG_5004	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	DNA repair exonuclease; Identified by match to protein family HMM PF00149.	0.702
ABK72766.1	ABK76086.1	MSMEG_1235	MSMEG_0433	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	Nitrite extrusion protein; Identified by match to protein family HMM PF07690.	0.559
ABK72766.1	cynS	MSMEG_1235	MSMEG_5359	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	0.726
ABK72766.1	nuoM	MSMEG_1235	MSMEG_2051	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	NADH-quinone oxidoreductase, M subunit; Identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.719
ABK72766.1	pks	MSMEG_1235	MSMEG_0408	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.715
ABK73175.1	ABK72766.1	MSMEG_0100	MSMEG_1235	Phosphotyrosine protein phosphatase ptpb.	Sulfate permease; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.702
ABK73175.1	ABK73621.1	MSMEG_0100	MSMEG_4263	Phosphotyrosine protein phosphatase ptpb.	Ubiquinol-cytochrome c reductase cytochrome b subunit; Identified by match to protein family HMM PF00033.	0.403
ABK73175.1	nuoM	MSMEG_0100	MSMEG_2051	Phosphotyrosine protein phosphatase ptpb.	NADH-quinone oxidoreductase, M subunit; Identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972.	0.921
ABK73175.1	pks	MSMEG_0100	MSMEG_0408	Phosphotyrosine protein phosphatase ptpb.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.413

page 1 of 3

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About