STRINGSTRING
ABK72012.1 ABK72012.1 ABK74529.1 ABK74529.1 ABK72388.1 ABK72388.1 ABK71448.1 ABK71448.1 ABK71841.1 ABK71841.1 ABK74691.1 ABK74691.1 ABK75869.1 ABK75869.1 ABK72704.1 ABK72704.1 ABK70017.1 ABK70017.1 doc doc ABK71781.1 ABK71781.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72012.1Ankyrin-repeat containing protein. (229 aa)    
Predicted Functional Partners:
ABK74529.1
ABC transporter, permease/ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
  
 0.830
ABK72388.1
Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021.
  
  
 0.830
ABK71448.1
ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 0.797
ABK71841.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
     
 0.772
ABK74691.1
Conserved hypothetical protein.
 
     0.685
ABK75869.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
     
 0.620
ABK72704.1
Identified by match to protein family HMM PF04909.
  
    0.603
ABK70017.1
RDD family protein, putative; Identified by match to protein family HMM PF06271.
 
    0.579
doc
Death-on-curing protein; Toxic component of a type II toxin-antitoxin (TA) system. Upon overexpression causes bacteriostasis. Its effect is neutralized by coexpression with cognate antitoxin PhD. May bind the 30S ribosomal subunit. In M.smegmatis 3 TA systems (VapB-VapC, MazE-MazF and Phd-Doc) may be involved in monitoring the nutritional supply and physiological state of the cell, linking catabolic with anabolic reactions.
   
  
 0.566
ABK71781.1
Identified by match to protein family HMM PF04909.
  
    0.566
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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