STRINGSTRING
ABK74386.1 ABK74386.1 rocD rocD ABK72158.1 ABK72158.1 ABK73445.1 ABK73445.1 ABK75345.1 ABK75345.1 pyrF pyrF ABK70620.1 ABK70620.1 ABK75315.1 ABK75315.1 egtB egtB ABK72153.1 ABK72153.1 cobM cobM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ABK74386.1Amidinotransferase; Identified by match to protein family HMM PF02274. (295 aa)    
Predicted Functional Partners:
rocD
Ornithine--oxo-acid transaminase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.966
ABK72158.1
AsnC-family protein transcriptional regulator; Identified by match to protein family HMM PF01037.
 
  
 0.855
ABK73445.1
Identified by match to protein family HMM PF00582.
  
  
 0.841
ABK75345.1
Amino acid permease; Identified by match to protein family HMM PF00324; match to protein family HMM PF01490.
  
  
 0.826
pyrF
Orotidine 5'-phosphate decarboxylase; Identified by match to protein family HMM PF00215; match to protein family HMM TIGR02127; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
 
 0.809
ABK70620.1
Endonuclease IV; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587.
  
  
 0.787
ABK75315.1
Dihydrolipoamide dehydrogenase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.
  
  
 0.779
egtB
Conserved hypothetical protein; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine. Cannot use the alternative thiols cysteine, N- acetylcysteine, or glutathione instead of gamma-glutamylcysteine as substrates, and histidine is a poor sulfur acceptor substrate compared to hercynine; Belongs to the EgtB family.
   
  
 0.777
ABK72153.1
Modulator of DNA gyrase; Identified by match to protein family HMM PF01523.
      
 0.776
cobM
Precorrin-4 C11-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; Belongs to the precorrin methyltransferase family.
      
 0.773
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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