Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69927.1 | ABK75006.1 | MSMEG_1448 | MSMEG_1447 | Integral membrane transporter; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740. | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | 0.820 |
| ABK69927.1 | glnA | MSMEG_1448 | MSMEG_3561 | Integral membrane transporter; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740. | Glutamine synthetase, catalytic domain; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family. | 0.400 |
| ABK73714.1 | ABK74955.1 | MSMEG_3180 | MSMEG_2752 | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | Sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.452 |
| ABK73714.1 | ABK75006.1 | MSMEG_3180 | MSMEG_1447 | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | 0.766 |
| ABK73714.1 | dnaJ | MSMEG_3180 | MSMEG_0711 | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.603 |
| ABK73714.1 | dnaJ-2 | MSMEG_3180 | MSMEG_4504 | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.597 |
| ABK73714.1 | glnA | MSMEG_3180 | MSMEG_3561 | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | Glutamine synthetase, catalytic domain; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family. | 0.448 |
| ABK73714.1 | glnA-2 | MSMEG_3180 | MSMEG_4290 | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | Glutamine synthetase, type I; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.506 |
| ABK73714.1 | sigA | MSMEG_3180 | MSMEG_2758 | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | Sigma factor MysA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.452 |
| ABK74153.1 | ABK74955.1 | MSMEG_1969 | MSMEG_2752 | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | Sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.452 |
| ABK74153.1 | ABK75006.1 | MSMEG_1969 | MSMEG_1447 | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | 0.674 |
| ABK74153.1 | dnaJ | MSMEG_1969 | MSMEG_0711 | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.602 |
| ABK74153.1 | dnaJ-2 | MSMEG_1969 | MSMEG_4504 | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.597 |
| ABK74153.1 | glnA | MSMEG_1969 | MSMEG_3561 | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | Glutamine synthetase, catalytic domain; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family. | 0.448 |
| ABK74153.1 | glnA-2 | MSMEG_1969 | MSMEG_4290 | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | Glutamine synthetase, type I; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia; Belongs to the glutamine synthetase family. | 0.440 |
| ABK74153.1 | sigA | MSMEG_1969 | MSMEG_2758 | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | Sigma factor MysA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.446 |
| ABK74153.1 | soxR | MSMEG_1969 | MSMEG_5450 | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | Redox-sensitive transcriptional activator SoxR; Identified by similarity to SP:P22538; match to protein family HMM PF00376; match to protein family HMM TIGR01950. | 0.627 |
| ABK74955.1 | ABK73714.1 | MSMEG_2752 | MSMEG_3180 | Sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | 0.452 |
| ABK74955.1 | ABK74153.1 | MSMEG_2752 | MSMEG_1969 | Sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | MerR-family protein transcriptional regulator; Identified by match to protein family HMM PF00376. | 0.452 |
| ABK74955.1 | ABK75006.1 | MSMEG_2752 | MSMEG_1447 | Sigma factor SigB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376. | 0.457 |
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