STRINGSTRING
ABK69927.1 ABK69927.1 ABK75006.1 ABK75006.1 cynS cynS nuoM nuoM pks pks ABK70529.1 ABK70529.1 ABK73621.1 ABK73621.1 ABK73175.1 ABK73175.1 ABK75618.1 ABK75618.1 ABK76086.1 ABK76086.1 ABK73923.1 ABK73923.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK69927.1Integral membrane transporter; Identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740. (499 aa)    
Predicted Functional Partners:
ABK75006.1
Transcriptional regulator, MerR family protein; Identified by match to protein family HMM PF00376.
 
    0.820
cynS
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
     
 0.722
nuoM
NADH-quinone oxidoreductase, M subunit; Identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972.
  
 
 0.719
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
  
 
 0.717
ABK70529.1
Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.
  
 
 0.712
ABK73621.1
Ubiquinol-cytochrome c reductase cytochrome b subunit; Identified by match to protein family HMM PF00033.
   
 
 0.705
ABK73175.1
Phosphotyrosine protein phosphatase ptpb.
   
 
 0.702
ABK75618.1
DNA repair exonuclease; Identified by match to protein family HMM PF00149.
  
   0.700
ABK76086.1
Nitrite extrusion protein; Identified by match to protein family HMM PF07690.
  
  
 0.556
ABK73923.1
NADH ubiquinone oxidoreductase subunit 5; Identified by match to protein family HMM PF00361; match to protein family HMM PF04039.
 
  
 0.540
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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