STRINGSTRING
ABK73400.1 ABK73400.1 nirB nirB narH narH narI narI ABK75176.1 ABK75176.1 ABK76086.1 ABK76086.1 ABK75431.1 ABK75431.1 ABK73285.1 ABK73285.1 ABK70445.1 ABK70445.1 amiF amiF ABK75680.1 ABK75680.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK73400.1Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355. (116 aa)    
Predicted Functional Partners:
nirB
Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 0.962
narH
Nitrate reductase, beta subunit; Identified by match to protein family HMM TIGR01660.
  
 
 0.948
narI
Respiratory nitrate reductase, gamma subunit; Identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351.
  
 
 0.942
ABK75176.1
Nitrate reductase, alpha subunit; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.942
ABK76086.1
Nitrite extrusion protein; Identified by match to protein family HMM PF07690.
  
 
 0.920
ABK75431.1
Nitrate/nitrite transporter protein; Identified by match to protein family HMM PF07690.
  
 
 0.920
ABK73285.1
Pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
  
 
 0.918
ABK70445.1
Ferredoxin; Identified by match to protein family HMM PF00355.
 
    0.906
amiF
Formamidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.
  
 
  0.905
ABK75680.1
2-nitropropane dioxygenase, NPD; Identified by match to protein family HMM PF03060.
  
 
  0.904
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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