ABK70473.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70473.1

Translation initiation inhibitor; Identified by match to protein family HMM PF01042. (164 aa)

Predicted Functional Partners:

ABK76182.1

0.808

ABK70445.1

0.791

ABK76098.1

0.789

ABK73400.1

0.757

ABK73285.1

0.752

ABK73573.1

0.674

ABK70616.1

0.620

murQ

0.585

murE

0.556

murD

0.555

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70445.1	ABK70473.1	MSMEG_1462	MSMEG_1464	Ferredoxin; Identified by match to protein family HMM PF00355.	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	0.791
ABK70445.1	ABK70616.1	MSMEG_1462	MSMEG_1458	Ferredoxin; Identified by match to protein family HMM PF00355.	Identified by match to protein family HMM PF03070.	0.724
ABK70445.1	ABK73285.1	MSMEG_1462	MSMEG_1460	Ferredoxin; Identified by match to protein family HMM PF00355.	Pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.	0.990
ABK70445.1	ABK73400.1	MSMEG_1462	MSMEG_1459	Ferredoxin; Identified by match to protein family HMM PF00355.	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	0.906
ABK70445.1	ABK76098.1	MSMEG_1462	MSMEG_1461	Ferredoxin; Identified by match to protein family HMM PF00355.	5-oxovalerate dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.758
ABK70445.1	ABK76182.1	MSMEG_1462	MSMEG_1463	Ferredoxin; Identified by match to protein family HMM PF00355.	Gamma-glutamyltranspeptidase; Identified by match to protein family HMM PF01019.	0.841
ABK70473.1	ABK70445.1	MSMEG_1464	MSMEG_1462	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	Ferredoxin; Identified by match to protein family HMM PF00355.	0.791
ABK70473.1	ABK70616.1	MSMEG_1464	MSMEG_1458	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	Identified by match to protein family HMM PF03070.	0.620
ABK70473.1	ABK73285.1	MSMEG_1464	MSMEG_1460	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	Pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.	0.752
ABK70473.1	ABK73400.1	MSMEG_1464	MSMEG_1459	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	0.757
ABK70473.1	ABK73573.1	MSMEG_1464	MSMEG_6535	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	Translation elongation factor EF-G; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231.	0.674
ABK70473.1	ABK76098.1	MSMEG_1464	MSMEG_1461	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	5-oxovalerate dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.789
ABK70473.1	ABK76182.1	MSMEG_1464	MSMEG_1463	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	Gamma-glutamyltranspeptidase; Identified by match to protein family HMM PF01019.	0.808
ABK70473.1	murD	MSMEG_1464	MSMEG_4229	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.	0.555
ABK70473.1	murE	MSMEG_1464	MSMEG_4232	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.	0.556
ABK70473.1	murQ	MSMEG_1464	MSMEG_0193	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	Putative glucokinase regulator; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.	0.585
ABK70616.1	ABK70445.1	MSMEG_1458	MSMEG_1462	Identified by match to protein family HMM PF03070.	Ferredoxin; Identified by match to protein family HMM PF00355.	0.724
ABK70616.1	ABK70473.1	MSMEG_1458	MSMEG_1464	Identified by match to protein family HMM PF03070.	Translation initiation inhibitor; Identified by match to protein family HMM PF01042.	0.620
ABK70616.1	ABK73285.1	MSMEG_1458	MSMEG_1460	Identified by match to protein family HMM PF03070.	Pyridine nucleotide-disulphide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.	0.642
ABK70616.1	ABK73400.1	MSMEG_1458	MSMEG_1459	Identified by match to protein family HMM PF03070.	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	0.712