ABK74368.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK74368.1

acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (395 aa)

Predicted Functional Partners:

mmsB

0.965

mmsA

0.954

etfA

0.815

mmsA-2

0.780

ABK70326.1

0.773

etfB

0.769

ABK72254.1

0.758

ABK73410.1

0.730

ABK75990.1

0.704

ABK70325.1

0.676

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70325.1	ABK72254.1	MSMEG_6016	MSMEG_5276	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.795
ABK70325.1	ABK74368.1	MSMEG_6016	MSMEG_1497	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.676
ABK70325.1	ABK75990.1	MSMEG_6016	MSMEG_5720	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.703
ABK70325.1	etfA	MSMEG_6016	MSMEG_2352	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Electron transfer flavoprotein, alpha subunit; Identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012.	0.787
ABK70325.1	etfB	MSMEG_6016	MSMEG_2351	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:O85691; match to protein family HMM PF01012.	0.792
ABK70326.1	ABK73410.1	MSMEG_4863	MSMEG_0341	Conserved hypothetical protein; Identified by match to protein family HMM PF00296.	Conserved hypothetical protein; Identified by match to protein family HMM PF00296.	0.718
ABK70326.1	ABK74368.1	MSMEG_4863	MSMEG_1497	Conserved hypothetical protein; Identified by match to protein family HMM PF00296.	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.773
ABK72254.1	ABK70325.1	MSMEG_5276	MSMEG_6016	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.795
ABK72254.1	ABK74368.1	MSMEG_5276	MSMEG_1497	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.758
ABK72254.1	ABK75990.1	MSMEG_5276	MSMEG_5720	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.768
ABK72254.1	etfB	MSMEG_5276	MSMEG_2351	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:O85691; match to protein family HMM PF01012.	0.458
ABK72254.1	mmsA	MSMEG_5276	MSMEG_1498	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	Methylmalonate-semialdehyde dehydrogenase; Identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.432
ABK72254.1	mmsB	MSMEG_5276	MSMEG_1496	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	3-hydroxyisobutyrate dehydrogenase; Identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692; Belongs to the HIBADH-related family.	0.941
ABK73410.1	ABK70326.1	MSMEG_0341	MSMEG_4863	Conserved hypothetical protein; Identified by match to protein family HMM PF00296.	Conserved hypothetical protein; Identified by match to protein family HMM PF00296.	0.718
ABK73410.1	ABK74368.1	MSMEG_0341	MSMEG_1497	Conserved hypothetical protein; Identified by match to protein family HMM PF00296.	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.730
ABK74368.1	ABK70325.1	MSMEG_1497	MSMEG_6016	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.676
ABK74368.1	ABK70326.1	MSMEG_1497	MSMEG_4863	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Conserved hypothetical protein; Identified by match to protein family HMM PF00296.	0.773
ABK74368.1	ABK72254.1	MSMEG_1497	MSMEG_5276	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.758
ABK74368.1	ABK73410.1	MSMEG_1497	MSMEG_0341	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Conserved hypothetical protein; Identified by match to protein family HMM PF00296.	0.730
ABK74368.1	ABK75990.1	MSMEG_1497	MSMEG_5720	acyl-CoA dehydrogenase family protein member 8; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Putative 3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.704

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About