STRINGSTRING
ABK69784.1 ABK69784.1 ABK75273.1 ABK75273.1 ABK72448.1 ABK72448.1 ABK69931.1 ABK69931.1 ABK70882.1 ABK70882.1 rfbB rfbB ABK74515.1 ABK74515.1 rmlC rmlC ABK73624.1 ABK73624.1 ABK74637.1 ABK74637.1 ABK71106.1 ABK71106.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK69784.1Conserved hypothetical protein. (283 aa)    
Predicted Functional Partners:
ABK75273.1
Conserved hypothetical protein.
      
 0.815
ABK72448.1
29 kda antigen Cfp29; Identified by match to protein family HMM PF04454.
  
  
 0.787
ABK69931.1
Alanine-rich protein.
   
  
 0.757
ABK70882.1
SseC protein; Identified by match to protein family HMM PF07210.
   
  
 0.755
rfbB
dTDP-glucose 4,6-dehydratase; Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6- deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction (By similarity). Involved in the biosynthesis of the dTDP-L-rhamnose which is a component of the critical linker, D- N-acetylglucosamine-L-rhamnose disaccharide, which connects the galactan region of arabinogalactan to peptidoglycan via a phosphodiester linkage.
  
    0.719
ABK74515.1
Conserved hypothetical protein.
 
   
0.713
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Involved in the biosynthesis of the dTDP-L-rhamnose which is a component of the critical linker, D-N-acetylglucosamine-L-rhamnose disaccharide, which connects the galactan region of arabinogalactan to peptidoglycan via a phosphodiester linkage. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
    0.710
ABK73624.1
Identified by match to protein family HMM PF04075; match to protein family HMM TIGR00026.
  
  
 0.634
ABK74637.1
Identified by match to protein family HMM PF00881.
 
  
 0.632
ABK71106.1
35 kDa protein; Identified by match to protein family HMM PF04012.
   
  
 0.586
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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