STRINGSTRING
ABK75455.1 ABK75455.1 ABK72764.1 ABK72764.1 ABK72513.1 ABK72513.1 cobS cobS ABK72676.1 ABK72676.1 ABK72199.1 ABK72199.1 ABK74899.1 ABK74899.1 ABK69666.1 ABK69666.1 ABK70275.1 ABK70275.1 ABK74394.1 ABK74394.1 cobF cobF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75455.1Hypothetical protein; Identified by Glimmer2; putative. (165 aa)    
Predicted Functional Partners:
ABK72764.1
Spfh domain/band 7 family protein, putative; Identified by match to protein family HMM PF01145.
  
  
 0.910
ABK72513.1
Cobalamin biosynthesis protein cobIJ; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; match to protein family HMM TIGR01467; Belongs to the precorrin methyltransferase family.
  
    0.673
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
  
    0.668
ABK72676.1
Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.
  
    0.528
ABK72199.1
Two-component sensor histidine kinase; Identified by match to protein family HMM PF00027; match to protein family HMM PF02518.
  
    0.514
ABK74899.1
Integral membrane protein; Identified by match to protein family HMM PF03733.
  
    0.441
ABK69666.1
Superfamily protein I DNA or RNA helicase.
   
    0.435
ABK70275.1
Band 7 protein; Identified by match to protein family HMM PF01145.
  
  
 0.414
ABK74394.1
SpfH domain protein; Identified by match to protein family HMM PF01145.
  
  
 0.402
cobF
precorrin-6A synthase (deacetylating); Identified by match to protein family HMM PF00590; match to protein family HMM TIGR02434.
  
    0.400
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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