Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70692.1 | ABK71032.1 | MSMEG_1532 | MSMEG_4342 | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | Identified by match to protein family HMM PF00753. | 0.411 |
ABK70692.1 | ABK71707.1 | MSMEG_1532 | MSMEG_4662 | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | Deoxyribose-phosphate aldolase superfamily protein; Identified by match to protein family HMM PF01791. | 0.442 |
ABK70692.1 | ABK73967.1 | MSMEG_1532 | MSMEG_1534 | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | Probable conserved membrane protein; Identified by match to protein family HMM PF05108. | 0.555 |
ABK70692.1 | ABK74818.1 | MSMEG_1532 | MSMEG_0754 | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | Conserved hypothetical protein. | 0.461 |
ABK71032.1 | ABK70692.1 | MSMEG_4342 | MSMEG_1532 | Identified by match to protein family HMM PF00753. | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | 0.411 |
ABK71032.1 | ABK74818.1 | MSMEG_4342 | MSMEG_0754 | Identified by match to protein family HMM PF00753. | Conserved hypothetical protein. | 0.475 |
ABK71707.1 | ABK70692.1 | MSMEG_4662 | MSMEG_1532 | Deoxyribose-phosphate aldolase superfamily protein; Identified by match to protein family HMM PF01791. | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | 0.442 |
ABK73967.1 | ABK70692.1 | MSMEG_1534 | MSMEG_1532 | Probable conserved membrane protein; Identified by match to protein family HMM PF05108. | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | 0.555 |
ABK74818.1 | ABK70692.1 | MSMEG_0754 | MSMEG_1532 | Conserved hypothetical protein. | Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. | 0.461 |
ABK74818.1 | ABK71032.1 | MSMEG_0754 | MSMEG_4342 | Conserved hypothetical protein. | Identified by match to protein family HMM PF00753. | 0.475 |