Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69842.1 | ABK71619.1 | MSMEG_2203 | MSMEG_6183 | Alpha/beta hydrolase; Identified by match to protein family HMM PF00561. | Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF02674. | 0.489 |
ABK69842.1 | ABK71828.1 | MSMEG_2203 | MSMEG_5070 | Alpha/beta hydrolase; Identified by match to protein family HMM PF00561. | Trypsin; Identified by match to protein family HMM PF00089. | 0.493 |
ABK69842.1 | ABK72861.1 | MSMEG_2203 | MSMEG_1570 | Alpha/beta hydrolase; Identified by match to protein family HMM PF00561. | Carboxylesterase; Identified by match to protein family HMM PF00561. | 0.499 |
ABK69842.1 | ABK74091.1 | MSMEG_2203 | MSMEG_5486 | Alpha/beta hydrolase; Identified by match to protein family HMM PF00561. | Peptidase S1 and S6, chymotrypsin/Hap; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.491 |
ABK69842.1 | pks | MSMEG_2203 | MSMEG_0408 | Alpha/beta hydrolase; Identified by match to protein family HMM PF00561. | Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801. | 0.437 |
ABK70402.1 | ABK71619.1 | MSMEG_5389 | MSMEG_6183 | LysA protein. | Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF02674. | 0.518 |
ABK70402.1 | ABK71828.1 | MSMEG_5389 | MSMEG_5070 | LysA protein. | Trypsin; Identified by match to protein family HMM PF00089. | 0.524 |
ABK70402.1 | ABK72861.1 | MSMEG_5389 | MSMEG_1570 | LysA protein. | Carboxylesterase; Identified by match to protein family HMM PF00561. | 0.522 |
ABK70402.1 | ABK74091.1 | MSMEG_5389 | MSMEG_5486 | LysA protein. | Peptidase S1 and S6, chymotrypsin/Hap; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.525 |
ABK70402.1 | pks | MSMEG_5389 | MSMEG_0408 | LysA protein. | Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801. | 0.581 |
ABK70804.1 | ABK72861.1 | MSMEG_1567 | MSMEG_1570 | Conserved hypothetical protein. | Carboxylesterase; Identified by match to protein family HMM PF00561. | 0.595 |
ABK70804.1 | ABK75024.1 | MSMEG_1567 | MSMEG_1566 | Conserved hypothetical protein. | Oxidoreductase; Identified by match to protein family HMM PF00296. | 0.679 |
ABK70804.1 | glmS | MSMEG_1567 | MSMEG_1568 | Conserved hypothetical protein. | Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. | 0.636 |
ABK71619.1 | ABK69842.1 | MSMEG_6183 | MSMEG_2203 | Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF02674. | Alpha/beta hydrolase; Identified by match to protein family HMM PF00561. | 0.489 |
ABK71619.1 | ABK70402.1 | MSMEG_6183 | MSMEG_5389 | Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF02674. | LysA protein. | 0.518 |
ABK71619.1 | ABK72861.1 | MSMEG_6183 | MSMEG_1570 | Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF02674. | Carboxylesterase; Identified by match to protein family HMM PF00561. | 0.461 |
ABK71619.1 | ABK74091.1 | MSMEG_6183 | MSMEG_5486 | Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF02674. | Peptidase S1 and S6, chymotrypsin/Hap; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. | 0.530 |
ABK71619.1 | pks | MSMEG_6183 | MSMEG_0408 | Serine protease; Identified by match to protein family HMM PF00089; match to protein family HMM PF02674. | Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801. | 0.695 |
ABK71828.1 | ABK69842.1 | MSMEG_5070 | MSMEG_2203 | Trypsin; Identified by match to protein family HMM PF00089. | Alpha/beta hydrolase; Identified by match to protein family HMM PF00561. | 0.493 |
ABK71828.1 | ABK70402.1 | MSMEG_5070 | MSMEG_5389 | Trypsin; Identified by match to protein family HMM PF00089. | LysA protein. | 0.524 |
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