Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69746.1 | ABK74665.1 | MSMEG_1619 | MSMEG_1620 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein. | 0.777 |
| ABK69746.1 | ABK76097.1 | MSMEG_1619 | MSMEG_1622 | Hypothetical protein; Identified by Glimmer2; putative. | Putative DNA repair polymerase. | 0.778 |
| ABK74665.1 | ABK69746.1 | MSMEG_1620 | MSMEG_1619 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.777 |
| ABK74665.1 | ABK75344.1 | MSMEG_1620 | MSMEG_6275 | Conserved hypothetical protein. | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | 0.757 |
| ABK74665.1 | ABK75618.1 | MSMEG_1620 | MSMEG_5004 | Conserved hypothetical protein. | DNA repair exonuclease; Identified by match to protein family HMM PF00149. | 0.731 |
| ABK74665.1 | ABK76097.1 | MSMEG_1620 | MSMEG_1622 | Conserved hypothetical protein. | Putative DNA repair polymerase. | 0.997 |
| ABK74665.1 | dinB | MSMEG_1620 | MSMEG_1014 | Conserved hypothetical protein. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.662 |
| ABK74665.1 | dinB-2 | MSMEG_1620 | MSMEG_2294 | Conserved hypothetical protein. | DNA polymerase IV; Identified by match to protein family HMM PF00817. | 0.656 |
| ABK74665.1 | dinB-3 | MSMEG_1620 | MSMEG_3172 | Conserved hypothetical protein. | DNA polymerase IV 1; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.660 |
| ABK74665.1 | dinP | MSMEG_1620 | MSMEG_6443 | Conserved hypothetical protein. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.656 |
| ABK74665.1 | dnaE2 | MSMEG_1620 | MSMEG_1633 | Conserved hypothetical protein. | DNA polymerase III, alpha subunit, putative; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.954 |
| ABK74665.1 | lexA | MSMEG_1620 | MSMEG_2740 | Conserved hypothetical protein. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.567 |
| ABK75344.1 | ABK74665.1 | MSMEG_6275 | MSMEG_1620 | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | Conserved hypothetical protein. | 0.757 |
| ABK75344.1 | dinB | MSMEG_6275 | MSMEG_1014 | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.511 |
| ABK75344.1 | dinB-2 | MSMEG_6275 | MSMEG_2294 | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase IV; Identified by match to protein family HMM PF00817. | 0.511 |
| ABK75344.1 | dinB-3 | MSMEG_6275 | MSMEG_3172 | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase IV 1; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.716 |
| ABK75344.1 | dinP | MSMEG_6275 | MSMEG_6443 | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.472 |
| ABK75344.1 | dnaE2 | MSMEG_6275 | MSMEG_1633 | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | DNA polymerase III, alpha subunit, putative; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.782 |
| ABK75344.1 | lexA | MSMEG_6275 | MSMEG_2740 | DNA polymerase III subunit epsilon; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.701 |
| ABK75618.1 | ABK74665.1 | MSMEG_5004 | MSMEG_1620 | DNA repair exonuclease; Identified by match to protein family HMM PF00149. | Conserved hypothetical protein. | 0.731 |
page 1 of 4