Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70400.1 | ABK71120.1 | MSMEG_1626 | MSMEG_3192 | Putative DNA-binding protein. | Conserved hypothetical protein, putative; Identified by match to protein family HMM TIGR03083. | 0.428 |
ABK70400.1 | ABK71541.1 | MSMEG_1626 | MSMEG_3436 | Putative DNA-binding protein. | Conserved hypothetical protein. | 0.420 |
ABK70400.1 | ABK72751.1 | MSMEG_1626 | MSMEG_1628 | Putative DNA-binding protein. | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.535 |
ABK70400.1 | ABK73228.1 | MSMEG_1626 | MSMEG_0682 | Putative DNA-binding protein. | Conserved hypothetical protein, putative; Identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083. | 0.428 |
ABK70400.1 | ABK75346.1 | MSMEG_1626 | MSMEG_0441 | Putative DNA-binding protein. | Conserved hypothetical protein, putative; Identified by match to protein family HMM TIGR03083. | 0.491 |
ABK71120.1 | ABK70400.1 | MSMEG_3192 | MSMEG_1626 | Conserved hypothetical protein, putative; Identified by match to protein family HMM TIGR03083. | Putative DNA-binding protein. | 0.428 |
ABK71541.1 | ABK70400.1 | MSMEG_3436 | MSMEG_1626 | Conserved hypothetical protein. | Putative DNA-binding protein. | 0.420 |
ABK72751.1 | ABK70400.1 | MSMEG_1628 | MSMEG_1626 | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Putative DNA-binding protein. | 0.535 |
ABK73228.1 | ABK70400.1 | MSMEG_0682 | MSMEG_1626 | Conserved hypothetical protein, putative; Identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083. | Putative DNA-binding protein. | 0.428 |
ABK75346.1 | ABK70400.1 | MSMEG_0441 | MSMEG_1626 | Conserved hypothetical protein, putative; Identified by match to protein family HMM TIGR03083. | Putative DNA-binding protein. | 0.491 |