Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70939.1 | ABK71995.1 | MSMEG_1660 | MSMEG_1659 | Oxidoreductase, 2-nitropropane dioxygenase family protein; Identified by match to protein family HMM PF03060. | Multidrug resistance protein, SMR family protein; Identified by match to protein family HMM PF00893. | 0.543 |
ABK71834.1 | ABK71995.1 | MSMEG_3672 | MSMEG_1659 | Transporter, small multidrug resistance (SMR) family protein; Identified by similarity to SP:Q57225; match to protein family HMM PF00893. | Multidrug resistance protein, SMR family protein; Identified by match to protein family HMM PF00893. | 0.624 |
ABK71834.1 | ABK74464.1 | MSMEG_3672 | MSMEG_3670 | Transporter, small multidrug resistance (SMR) family protein; Identified by similarity to SP:Q57225; match to protein family HMM PF00893. | Transporter, small multidrug resistance (SMR) family protein; Identified by similarity to SP:Q57225; match to protein family HMM PF00893. | 0.860 |
ABK71995.1 | ABK70939.1 | MSMEG_1659 | MSMEG_1660 | Multidrug resistance protein, SMR family protein; Identified by match to protein family HMM PF00893. | Oxidoreductase, 2-nitropropane dioxygenase family protein; Identified by match to protein family HMM PF03060. | 0.543 |
ABK71995.1 | ABK71834.1 | MSMEG_1659 | MSMEG_3672 | Multidrug resistance protein, SMR family protein; Identified by match to protein family HMM PF00893. | Transporter, small multidrug resistance (SMR) family protein; Identified by similarity to SP:Q57225; match to protein family HMM PF00893. | 0.624 |
ABK71995.1 | ABK74464.1 | MSMEG_1659 | MSMEG_3670 | Multidrug resistance protein, SMR family protein; Identified by match to protein family HMM PF00893. | Transporter, small multidrug resistance (SMR) family protein; Identified by similarity to SP:Q57225; match to protein family HMM PF00893. | 0.525 |
ABK74464.1 | ABK71834.1 | MSMEG_3670 | MSMEG_3672 | Transporter, small multidrug resistance (SMR) family protein; Identified by similarity to SP:Q57225; match to protein family HMM PF00893. | Transporter, small multidrug resistance (SMR) family protein; Identified by similarity to SP:Q57225; match to protein family HMM PF00893. | 0.860 |
ABK74464.1 | ABK71995.1 | MSMEG_3670 | MSMEG_1659 | Transporter, small multidrug resistance (SMR) family protein; Identified by similarity to SP:Q57225; match to protein family HMM PF00893. | Multidrug resistance protein, SMR family protein; Identified by match to protein family HMM PF00893. | 0.525 |