STRINGSTRING
ABK73230.1 ABK73230.1 dacB dacB ABK75131.1 ABK75131.1 ABK73743.1 ABK73743.1 ABK71878.1 ABK71878.1 ABK73008.1 ABK73008.1 ABK74253.1 ABK74253.1 nagA nagA pbpB pbpB ABK70168.1 ABK70168.1 ABK72995.1 ABK72995.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ABK73230.1D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family. (397 aa)    
Predicted Functional Partners:
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Carboxypeptidase that cleaves terminal D-alanine from peptidoglycan in the mycobacterial cell wall. May cleave L-Lys-D-Ala and/or D-Ala-D-Ala peptide bonds. Exerts important effects on mycobacterial cell morphology and cell division. Belongs to the peptidase S13 family.
     
 0.994
ABK75131.1
Identified by match to protein family HMM PF02557.
  
 
 0.982
ABK73743.1
D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
  
 
0.922
ABK71878.1
D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
  
  
0.922
ABK73008.1
Conserved hypothetical protein.
      
 0.786
ABK74253.1
Taurine-pyruvate aminotransferase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.742
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.
  
  
 0.683
pbpB
Penicillin binding protein transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; Belongs to the transpeptidase family.
 
  
 0.582
ABK70168.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
  
  
 0.559
ABK72995.1
Transcriptional regulator, AsnC family protein; Identified by match to protein family HMM PF01037.
  
    0.556
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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