STRINGSTRING
ABK69787.1 ABK69787.1 ABK74234.1 ABK74234.1 ABK74202.1 ABK74202.1 ABK69679.1 ABK69679.1 ABK74914.1 ABK74914.1 ABK73705.1 ABK73705.1 ABK70599.1 ABK70599.1 whiB whiB katA-2 katA-2 ABK71336.1 ABK71336.1 ABK69912.1 ABK69912.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK69787.1Regulatory protein, MarR; Identified by match to protein family HMM PF01047. (158 aa)    
Predicted Functional Partners:
ABK74234.1
Phosphoglucomutase/phosphomannomutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.
  
  
 0.961
ABK74202.1
Conserved hypothetical protein.
  
  
 0.816
ABK69679.1
Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
      
 0.812
ABK74914.1
Cytochrome c oxidase subunit 2; Identified by match to protein family HMM PF00116.
   
  
 0.769
ABK73705.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
     
 0.765
ABK70599.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02591.
      
 0.586
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
      
 0.575
katA-2
Catalase KatA; Identified by similarity to SP:P26901; match to protein family HMM PF00199.
  
  
 0.570
ABK71336.1
Putative ammonia monooxygenase superfamily protein; Identified by match to protein family HMM PF05145; match to protein family HMM TIGR03082.
  
  
 0.566
ABK69912.1
Phosphoglycerate mutase; Identified by match to protein family HMM PF00300.
  
  
 0.560
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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