STRINGSTRING
ABK71993.1 ABK71993.1 ABK72773.1 ABK72773.1 prfA prfA ABK69999.1 ABK69999.1 atpFH atpFH ABK75582.1 ABK75582.1 ABK71980.1 ABK71980.1 ABK69723.1 ABK69723.1 ABK73168.1 ABK73168.1 atpE atpE atpG atpG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71993.1Methylase, putative; Identified by match to protein family HMM PF01170; match to protein family HMM PF05175; match to protein family HMM TIGR00537. (222 aa)    
Predicted Functional Partners:
ABK72773.1
Conserved hypothetical protein.
 
    0.946
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
  
 
 0.882
ABK69999.1
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.734
atpFH
ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity).
  
   0.635
ABK75582.1
Conserved hypothetical protein.
 
    0.575
ABK71980.1
Conserved hypothetical protein; Identified by match to protein family HMM PF05532; Belongs to the UPF0337 (CsbD) family.
  
    0.552
ABK69723.1
Identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Belongs to the SUA5 family.
 
  
 0.531
ABK73168.1
Dehydrogenase; Identified by match to protein family HMM PF00296.
  
    0.521
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   0.515
atpG
ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
  
 
 0.467
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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