Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69640.1 | ABK72700.1 | MSMEG_3915 | MSMEG_1795 | NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107. | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | 0.482 |
ABK69640.1 | ABK74292.1 | MSMEG_3915 | MSMEG_2564 | NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107. | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | 0.534 |
ABK71453.1 | ABK72700.1 | MSMEG_5287 | MSMEG_1795 | Dehydrogenase; Identified by match to protein family HMM PF00107. | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | 0.469 |
ABK71453.1 | ABK74292.1 | MSMEG_5287 | MSMEG_2564 | Dehydrogenase; Identified by match to protein family HMM PF00107. | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | 0.601 |
ABK71722.1 | ABK72562.1 | MSMEG_1796 | MSMEG_1793 | Identified by match to protein family HMM PF01266. | Membrane protein. | 0.506 |
ABK71722.1 | ABK72700.1 | MSMEG_1796 | MSMEG_1795 | Identified by match to protein family HMM PF01266. | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | 0.828 |
ABK71722.1 | ABK72895.1 | MSMEG_1796 | MSMEG_1797 | Identified by match to protein family HMM PF01266. | Salicylate esterase; Identified by match to protein family HMM PF00561. | 0.816 |
ABK71722.1 | ABK74957.1 | MSMEG_1796 | MSMEG_1799 | Identified by match to protein family HMM PF01266. | Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | 0.512 |
ABK71722.1 | ABK75649.1 | MSMEG_1796 | MSMEG_1798 | Identified by match to protein family HMM PF01266. | Major facilitator superfamily protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | 0.785 |
ABK72562.1 | ABK71722.1 | MSMEG_1793 | MSMEG_1796 | Membrane protein. | Identified by match to protein family HMM PF01266. | 0.506 |
ABK72562.1 | ABK72700.1 | MSMEG_1793 | MSMEG_1795 | Membrane protein. | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | 0.495 |
ABK72562.1 | ABK72895.1 | MSMEG_1793 | MSMEG_1797 | Membrane protein. | Salicylate esterase; Identified by match to protein family HMM PF00561. | 0.495 |
ABK72562.1 | ABK75649.1 | MSMEG_1793 | MSMEG_1798 | Membrane protein. | Major facilitator superfamily protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | 0.492 |
ABK72700.1 | ABK69640.1 | MSMEG_1795 | MSMEG_3915 | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107. | 0.482 |
ABK72700.1 | ABK71453.1 | MSMEG_1795 | MSMEG_5287 | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | Dehydrogenase; Identified by match to protein family HMM PF00107. | 0.469 |
ABK72700.1 | ABK71722.1 | MSMEG_1795 | MSMEG_1796 | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | Identified by match to protein family HMM PF01266. | 0.828 |
ABK72700.1 | ABK72562.1 | MSMEG_1795 | MSMEG_1793 | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | Membrane protein. | 0.495 |
ABK72700.1 | ABK72895.1 | MSMEG_1795 | MSMEG_1797 | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | Salicylate esterase; Identified by match to protein family HMM PF00561. | 0.791 |
ABK72700.1 | ABK74292.1 | MSMEG_1795 | MSMEG_2564 | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | 0.547 |
ABK72700.1 | ABK74957.1 | MSMEG_1795 | MSMEG_1799 | 2-deoxy-scyllo-inosamine dehydrogenase; Identified by match to protein family HMM PF00107. | Transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | 0.532 |
page 1 of 3