Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70379.1 | ABK71896.1 | MSMEG_2771 | MSMEG_1945 | TrkA protein; Identified by match to protein family HMM PF02254. | Ion channel membrane protein; Identified by match to protein family HMM PF02254; match to protein family HMM PF07885. | 0.819 |
| ABK70379.1 | ABK74825.1 | MSMEG_2771 | MSMEG_2769 | TrkA protein; Identified by match to protein family HMM PF02254. | TrkB protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.956 |
| ABK70379.1 | selA | MSMEG_2771 | MSMEG_1850 | TrkA protein; Identified by match to protein family HMM PF02254. | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.470 |
| ABK71896.1 | ABK70379.1 | MSMEG_1945 | MSMEG_2771 | Ion channel membrane protein; Identified by match to protein family HMM PF02254; match to protein family HMM PF07885. | TrkA protein; Identified by match to protein family HMM PF02254. | 0.819 |
| ABK71896.1 | ABK74825.1 | MSMEG_1945 | MSMEG_2769 | Ion channel membrane protein; Identified by match to protein family HMM PF02254; match to protein family HMM PF07885. | TrkB protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | 0.817 |
| ABK71896.1 | selA | MSMEG_1945 | MSMEG_1850 | Ion channel membrane protein; Identified by match to protein family HMM PF02254; match to protein family HMM PF07885. | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.467 |
| ABK73695.1 | ABK74447.1 | MSMEG_1846 | MSMEG_1847 | Polysulphide reductase, NrfD; Identified by match to protein family HMM PF03916. | 4Fe-4S ferredoxin, iron-sulfur binding protein; Identified by match to protein family HMM PF00037. | 0.979 |
| ABK73695.1 | selA | MSMEG_1846 | MSMEG_1850 | Polysulphide reductase, NrfD; Identified by match to protein family HMM PF03916. | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.794 |
| ABK73695.1 | selB | MSMEG_1846 | MSMEG_1849 | Polysulphide reductase, NrfD; Identified by match to protein family HMM PF03916. | Selenocysteine-specific translation elongation factor; Identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475. | 0.820 |
| ABK73695.1 | selD | MSMEG_1846 | MSMEG_1852 | Polysulphide reductase, NrfD; Identified by match to protein family HMM PF03916. | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. | 0.777 |
| ABK74447.1 | ABK73695.1 | MSMEG_1847 | MSMEG_1846 | 4Fe-4S ferredoxin, iron-sulfur binding protein; Identified by match to protein family HMM PF00037. | Polysulphide reductase, NrfD; Identified by match to protein family HMM PF03916. | 0.979 |
| ABK74447.1 | selA | MSMEG_1847 | MSMEG_1850 | 4Fe-4S ferredoxin, iron-sulfur binding protein; Identified by match to protein family HMM PF00037. | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.842 |
| ABK74447.1 | selB | MSMEG_1847 | MSMEG_1849 | 4Fe-4S ferredoxin, iron-sulfur binding protein; Identified by match to protein family HMM PF00037. | Selenocysteine-specific translation elongation factor; Identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475. | 0.841 |
| ABK74447.1 | selD | MSMEG_1847 | MSMEG_1852 | 4Fe-4S ferredoxin, iron-sulfur binding protein; Identified by match to protein family HMM PF00037. | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. | 0.824 |
| ABK74825.1 | ABK70379.1 | MSMEG_2769 | MSMEG_2771 | TrkB protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | TrkA protein; Identified by match to protein family HMM PF02254. | 0.956 |
| ABK74825.1 | ABK71896.1 | MSMEG_2769 | MSMEG_1945 | TrkB protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | Ion channel membrane protein; Identified by match to protein family HMM PF02254; match to protein family HMM PF07885. | 0.817 |
| ABK74825.1 | selA | MSMEG_2769 | MSMEG_1850 | TrkB protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254. | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.468 |
| dnaA | selA | MSMEG_6947 | MSMEG_1850 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity). | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.504 |
| dnaA | selD | MSMEG_6947 | MSMEG_1852 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity). | Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. | 0.622 |
| psd | selA | MSMEG_0861 | MSMEG_1850 | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. | 0.454 |
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