STRINGSTRING
ABK74053.1 ABK74053.1 dut dut ABK70839.1 ABK70839.1 polA polA ABK71683.1 ABK71683.1 ABK73328.1 ABK73328.1 rplF rplF ABK73525.1 ABK73525.1 ABK74282.1 ABK74282.1 ABK76165.1 ABK76165.1 ABK71187.1 ABK71187.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK74053.1Transposase. (69 aa)    
Predicted Functional Partners:
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
    
 0.894
ABK70839.1
Transposase; Identified by match to protein family HMM PF01527.
 
    0.773
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.749
ABK71683.1
PAP2 superfamily protein; Identified by match to protein family HMM PF00781; match to protein family HMM PF01569.
  
 
 0.715
ABK73328.1
ATPase.
  
    0.710
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.683
ABK73525.1
PAP2 superfamily protein; Identified by match to protein family HMM PF01569.
   
 0.664
ABK74282.1
Conserved hypothetical protein.
   
 0.664
ABK76165.1
PAP2 superfamily protein; Identified by match to protein family HMM PF01569.
   
 0.663
ABK71187.1
PAP2 superfamily protein; Involved in the biosynthesis of decaprenylphosphoryl arabinose (DPA) a precursor for arabinan synthesis in mycobacterial cell wall biosynthesis. Could be involved in the dephosphorylation of decaprenylphosphoryl-5-phosphoribose (DPPR) to decaprenyl-phospho- ribose (DPR); Belongs to the PA-phosphatase related phosphoesterase family.
    
 0.659
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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