STRINGSTRING
ABK74723.1 ABK74723.1 ABK69627.1 ABK69627.1 ABK71757.1 ABK71757.1 pcaD pcaD ABK72748.1 ABK72748.1 ABK69851.1 ABK69851.1 ABK71539.1 ABK71539.1 ABK70302.1 ABK70302.1 ABK69923.1 ABK69923.1 ABK73340.1 ABK73340.1 ABK73484.1 ABK73484.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK74723.1UbiE/COQ5 methyltransferase. (268 aa)    
Predicted Functional Partners:
ABK69627.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106.
   
 
 0.696
ABK71757.1
HTH-type transcriptional regulator AlsR; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
     
 0.652
pcaD
3-oxoadipate enol-lactonase; Identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427.
  
  
 0.507
ABK72748.1
succinyl-CoA:3-ketoacid-coenzyme A transferase 1, precursor; Identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429.
  
    0.485
ABK69851.1
succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B; Identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428.
  
    0.484
ABK71539.1
Beta-ketothiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.483
ABK70302.1
Methyltransferase type 12; Identified by match to protein family HMM PF05724.
 
 
 0.476
ABK69923.1
SAM-dependent methyltransferase; Identified by match to protein family HMM PF01209.
  
    0.430
ABK73340.1
Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
   
  
 0.430
ABK73484.1
Monooxygenase; Identified by match to protein family HMM PF01494.
   
  
 0.429
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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