ABK69693.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK69693.1

Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656. (265 aa)

Predicted Functional Partners:

ABK73674.1

0.955

ABK69697.1

0.848

ABK75945.1

0.843

ABK72021.1

0.800

ABK74748.1

0.746

topA

0.664

ABK76147.1

0.653

ABK74693.1

0.600

dnaA

0.596

scpA

0.585

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69693.1	ABK69697.1	MSMEG_1927	MSMEG_1925	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	0.848
ABK69693.1	ABK72021.1	MSMEG_1927	MSMEG_1926	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	Identified by match to protein family HMM PF00300.	0.800
ABK69693.1	ABK73674.1	MSMEG_1927	MSMEG_6938	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	ParB-like partition proteins; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	0.955
ABK69693.1	ABK74693.1	MSMEG_1927	MSMEG_1929	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	Conserved hypothetical protein.	0.600
ABK69693.1	ABK74748.1	MSMEG_1927	MSMEG_1924	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	N-acetyltransferase Ats1; Identified by match to protein family HMM PF00583.	0.746
ABK69693.1	ABK75945.1	MSMEG_1927	MSMEG_1928	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	Identified by match to protein family HMM PF00481.	0.843
ABK69693.1	ABK76147.1	MSMEG_1927	MSMEG_2690	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	DNA translocase FtsK; Identified by match to protein family HMM PF01580; Belongs to the FtsK/SpoIIIE/SftA family.	0.653
ABK69693.1	dnaA	MSMEG_1927	MSMEG_6947	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity).	0.596
ABK69693.1	scpA	MSMEG_1927	MSMEG_3742	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.	0.585
ABK69693.1	topA	MSMEG_1927	MSMEG_6157	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA sup [...]	0.664
ABK69697.1	ABK69693.1	MSMEG_1925	MSMEG_1927	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	0.848
ABK69697.1	ABK72021.1	MSMEG_1925	MSMEG_1926	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	Identified by match to protein family HMM PF00300.	0.902
ABK69697.1	ABK74748.1	MSMEG_1925	MSMEG_1924	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	N-acetyltransferase Ats1; Identified by match to protein family HMM PF00583.	0.896
ABK69697.1	ABK75945.1	MSMEG_1925	MSMEG_1928	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	Identified by match to protein family HMM PF00481.	0.548
ABK72021.1	ABK69693.1	MSMEG_1926	MSMEG_1927	Identified by match to protein family HMM PF00300.	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	0.800
ABK72021.1	ABK69697.1	MSMEG_1926	MSMEG_1925	Identified by match to protein family HMM PF00300.	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	0.902
ABK72021.1	ABK74748.1	MSMEG_1926	MSMEG_1924	Identified by match to protein family HMM PF00300.	N-acetyltransferase Ats1; Identified by match to protein family HMM PF00583.	0.896
ABK72021.1	ABK75945.1	MSMEG_1926	MSMEG_1928	Identified by match to protein family HMM PF00300.	Identified by match to protein family HMM PF00481.	0.653
ABK73674.1	ABK69693.1	MSMEG_6938	MSMEG_1927	ParB-like partition proteins; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	Cobyrinic Acid a,c-diamide synthase; Identified by match to protein family HMM PF01656.	0.955
ABK73674.1	ABK76147.1	MSMEG_6938	MSMEG_2690	ParB-like partition proteins; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.	DNA translocase FtsK; Identified by match to protein family HMM PF01580; Belongs to the FtsK/SpoIIIE/SftA family.	0.892