ABK72779.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK72779.1

Hypothetical protein; Identified by Glimmer2; putative; Belongs to the WXG100 family. (173 aa)

Predicted Functional Partners:

ABK70459.1

0.956

nrdB

0.847

sppA

0.816

ABK75535.1

0.816

ABK75553.1

0.816

ABK73942.1

0.816

ABK75894.1

0.777

ABK70364.1

0.760

ABK74616.1

0.759

fni

0.754

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70364.1	ABK70459.1	MSMEG_4248	MSMEG_1961	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	Conserved hypothetical protein.	0.768
ABK70364.1	ABK72779.1	MSMEG_4248	MSMEG_1960	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the WXG100 family.	0.760
ABK70364.1	ABK73942.1	MSMEG_4248	MSMEG_4121	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.771
ABK70364.1	ABK74616.1	MSMEG_4248	MSMEG_6284	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353.	0.604
ABK70364.1	ABK75535.1	MSMEG_4248	MSMEG_1666	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	0.760
ABK70364.1	ABK75553.1	MSMEG_4248	MSMEG_2340	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	Hypothetical protein; Identified by Glimmer2; putative.	0.800
ABK70364.1	fni	MSMEG_4248	MSMEG_1057	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).	0.639
ABK70364.1	nrdB	MSMEG_4248	MSMEG_0358	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	Ribonucleoside-diphosphate reductase, beta subunit; Probable oxidase that might be involved in lipid metabolism. Belongs to the ribonucleoside diphosphate reductase small chain family. R2-like ligand binding oxidase subfamily.	0.625
ABK70364.1	sppA	MSMEG_4248	MSMEG_1476	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	Signal peptide peptidase SppA, 67K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706.	0.783
ABK70459.1	ABK70364.1	MSMEG_1961	MSMEG_4248	Conserved hypothetical protein.	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	0.768
ABK70459.1	ABK72779.1	MSMEG_1961	MSMEG_1960	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the WXG100 family.	0.956
ABK70459.1	ABK73942.1	MSMEG_1961	MSMEG_4121	Conserved hypothetical protein.	GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.	0.814
ABK70459.1	ABK74616.1	MSMEG_1961	MSMEG_6284	Conserved hypothetical protein.	Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353.	0.757
ABK70459.1	ABK75535.1	MSMEG_1961	MSMEG_1666	Conserved hypothetical protein.	RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.	0.849
ABK70459.1	ABK75553.1	MSMEG_1961	MSMEG_2340	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.851
ABK70459.1	ABK75894.1	MSMEG_1961	MSMEG_1962	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.816
ABK70459.1	fni	MSMEG_1961	MSMEG_1057	Conserved hypothetical protein.	Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).	0.802
ABK70459.1	nrdB	MSMEG_1961	MSMEG_0358	Conserved hypothetical protein.	Ribonucleoside-diphosphate reductase, beta subunit; Probable oxidase that might be involved in lipid metabolism. Belongs to the ribonucleoside diphosphate reductase small chain family. R2-like ligand binding oxidase subfamily.	0.855
ABK70459.1	sppA	MSMEG_1961	MSMEG_1476	Conserved hypothetical protein.	Signal peptide peptidase SppA, 67K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706.	0.814
ABK72779.1	ABK70364.1	MSMEG_1960	MSMEG_4248	Hypothetical protein; Identified by Glimmer2; putative; Belongs to the WXG100 family.	1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.	0.760