ABK72578.1 protein (Mycolicibacterium smegmatis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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Experiments

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Textmining

[Homology]

Score

ABK72578.1

Conserved hypothetical protein. (385 aa)

Predicted Functional Partners:

ABK74913.1

0.975

ABK73580.1

0.899

ABK70397.1

0.798

ABK70575.1

0.729

ABK74901.1

0.573

ABK70025.1

0.549

ABK76101.1

0.531

ABK74113.1

0.519

ABK69760.1

0.515

ABK75570.1

0.509

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69760.1	ABK70397.1	MSMEG_5930	MSMEG_5854	Conserved hypothetical protein.	Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.	0.612
ABK69760.1	ABK70575.1	MSMEG_5930	MSMEG_5933	Conserved hypothetical protein.	Conserved hypothetical protein.	0.699
ABK69760.1	ABK72578.1	MSMEG_5930	MSMEG_2109	Conserved hypothetical protein.	Conserved hypothetical protein.	0.515
ABK69760.1	ABK73580.1	MSMEG_5930	MSMEG_2106	Conserved hypothetical protein.	Putative transcriptional regulator; Identified by match to protein family HMM PF00440; match to protein family HMM PF02796.	0.616
ABK69760.1	ABK74113.1	MSMEG_5930	MSMEG_2929	Conserved hypothetical protein.	Identified by match to protein family HMM PF03061.	0.513
ABK69760.1	ABK74901.1	MSMEG_5930	MSMEG_5932	Conserved hypothetical protein.	Conserved hypothetical protein.	0.976
ABK70025.1	ABK72578.1	MSMEG_4631	MSMEG_2109	Conserved hypothetical protein.	Conserved hypothetical protein.	0.549
ABK70025.1	ABK73580.1	MSMEG_4631	MSMEG_2106	Conserved hypothetical protein.	Putative transcriptional regulator; Identified by match to protein family HMM PF00440; match to protein family HMM PF02796.	0.462
ABK70025.1	ABK74913.1	MSMEG_4631	MSMEG_2108	Conserved hypothetical protein.	Conserved hypothetical protein.	0.579
ABK70397.1	ABK69760.1	MSMEG_5854	MSMEG_5930	Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.	Conserved hypothetical protein.	0.612
ABK70397.1	ABK70575.1	MSMEG_5854	MSMEG_5933	Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.	Conserved hypothetical protein.	0.436
ABK70397.1	ABK72578.1	MSMEG_5854	MSMEG_2109	Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.	Conserved hypothetical protein.	0.798
ABK70397.1	ABK74113.1	MSMEG_5854	MSMEG_2929	Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.	Identified by match to protein family HMM PF03061.	0.536
ABK70397.1	ABK74901.1	MSMEG_5854	MSMEG_5932	Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.	Conserved hypothetical protein.	0.634
ABK70397.1	ABK74913.1	MSMEG_5854	MSMEG_2108	Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.	Conserved hypothetical protein.	0.749
ABK70575.1	ABK69760.1	MSMEG_5933	MSMEG_5930	Conserved hypothetical protein.	Conserved hypothetical protein.	0.699
ABK70575.1	ABK70397.1	MSMEG_5933	MSMEG_5854	Conserved hypothetical protein.	Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.	0.436
ABK70575.1	ABK72578.1	MSMEG_5933	MSMEG_2109	Conserved hypothetical protein.	Conserved hypothetical protein.	0.729
ABK70575.1	ABK73580.1	MSMEG_5933	MSMEG_2106	Conserved hypothetical protein.	Putative transcriptional regulator; Identified by match to protein family HMM PF00440; match to protein family HMM PF02796.	0.663
ABK70575.1	ABK74901.1	MSMEG_5933	MSMEG_5932	Conserved hypothetical protein.	Conserved hypothetical protein.	0.739