ABK71328.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK71328.1

Identified by match to protein family HMM PF02661. (402 aa)

Predicted Functional Partners:

surE

0.831

ABK70737.1

0.673

doc

0.627

ABK75147.1

0.558

ABK72247.1

0.540

ABK75128.1

0.540

ABK69670.1

0.540

ABK73501.1

0.538

ABK69893.1

0.536

ABK74742.1

0.536

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69670.1	ABK71328.1	MSMEG_5714	MSMEG_2140	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.	Identified by match to protein family HMM PF02661.	0.540
ABK69670.1	surE	MSMEG_5714	MSMEG_6820	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.	Acid phosphatase SurE; Identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087.	0.552
ABK69893.1	ABK71328.1	MSMEG_0715	MSMEG_2140	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	Identified by match to protein family HMM PF02661.	0.536
ABK69893.1	surE	MSMEG_0715	MSMEG_6820	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	Acid phosphatase SurE; Identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087.	0.550
ABK70737.1	ABK71328.1	MSMEG_2139	MSMEG_2140	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM PF02661.	0.673
ABK70737.1	ABK72247.1	MSMEG_2139	MSMEG_2142	Hypothetical protein; Identified by Glimmer2; putative.	Gp36 protein.	0.478
ABK70737.1	ABK75147.1	MSMEG_2139	MSMEG_2141	Hypothetical protein; Identified by Glimmer2; putative.	Gp35 protein.	0.498
ABK71328.1	ABK69670.1	MSMEG_2140	MSMEG_5714	Identified by match to protein family HMM PF02661.	Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.	0.540
ABK71328.1	ABK69893.1	MSMEG_2140	MSMEG_0715	Identified by match to protein family HMM PF02661.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.536
ABK71328.1	ABK70737.1	MSMEG_2140	MSMEG_2139	Identified by match to protein family HMM PF02661.	Hypothetical protein; Identified by Glimmer2; putative.	0.673
ABK71328.1	ABK72247.1	MSMEG_2140	MSMEG_2142	Identified by match to protein family HMM PF02661.	Gp36 protein.	0.540
ABK71328.1	ABK73501.1	MSMEG_2140	MSMEG_4169	Identified by match to protein family HMM PF02661.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.538
ABK71328.1	ABK74742.1	MSMEG_2140	MSMEG_3604	Identified by match to protein family HMM PF02661.	Sorbitol utilization protein SOU2; Identified by match to protein family HMM PF00106.	0.536
ABK71328.1	ABK75128.1	MSMEG_2140	MSMEG_4163	Identified by match to protein family HMM PF02661.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.	0.540
ABK71328.1	ABK75147.1	MSMEG_2140	MSMEG_2141	Identified by match to protein family HMM PF02661.	Gp35 protein.	0.558
ABK71328.1	doc	MSMEG_2140	MSMEG_1278	Identified by match to protein family HMM PF02661.	Death-on-curing protein; Toxic component of a type II toxin-antitoxin (TA) system. Upon overexpression causes bacteriostasis. Its effect is neutralized by coexpression with cognate antitoxin PhD. May bind the 30S ribosomal subunit. In M.smegmatis 3 TA systems (VapB-VapC, MazE-MazF and Phd-Doc) may be involved in monitoring the nutritional supply and physiological state of the cell, linking catabolic with anabolic reactions.	0.627
ABK71328.1	surE	MSMEG_2140	MSMEG_6820	Identified by match to protein family HMM PF02661.	Acid phosphatase SurE; Identified by match to protein family HMM PF01975; match to protein family HMM TIGR00087.	0.831
ABK72247.1	ABK70737.1	MSMEG_2142	MSMEG_2139	Gp36 protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.478
ABK72247.1	ABK71328.1	MSMEG_2142	MSMEG_2140	Gp36 protein.	Identified by match to protein family HMM PF02661.	0.540
ABK72247.1	ABK75147.1	MSMEG_2142	MSMEG_2141	Gp36 protein.	Gp35 protein.	0.751