Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69804.1 | ABK70236.1 | MSMEG_2219 | MSMEG_5521 | Identified by match to protein family HMM PF00378. | acetyl-CoA acetyltransferase. | 0.774 |
ABK69804.1 | ABK70651.1 | MSMEG_2219 | MSMEG_2220 | Identified by match to protein family HMM PF00378. | enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378. | 0.906 |
ABK69804.1 | ABK71286.1 | MSMEG_2219 | MSMEG_1787 | Identified by match to protein family HMM PF00378. | RsbW protein. | 0.814 |
ABK69804.1 | ABK72105.1 | MSMEG_2219 | MSMEG_2223 | Identified by match to protein family HMM PF00378. | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.896 |
ABK69804.1 | ABK72218.1 | MSMEG_2219 | MSMEG_2215 | Identified by match to protein family HMM PF00378. | AMP-binding enzyme; Identified by match to protein family HMM PF00501. | 0.932 |
ABK69804.1 | ABK72647.1 | MSMEG_2219 | MSMEG_6795 | Identified by match to protein family HMM PF00378. | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.786 |
ABK69804.1 | ABK73024.1 | MSMEG_2219 | MSMEG_2224 | Identified by match to protein family HMM PF00378. | acetyl-CoA C-acyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. | 0.820 |
ABK69804.1 | ABK73865.1 | MSMEG_2219 | MSMEG_2218 | Identified by match to protein family HMM PF00378. | Identified by match to protein family HMM PF00378. | 0.913 |
ABK69804.1 | ABK74130.1 | MSMEG_2219 | MSMEG_2216 | Identified by match to protein family HMM PF00378. | AMP-binding enzyme; Identified by match to protein family HMM PF00501. | 0.922 |
ABK69804.1 | ABK74471.1 | MSMEG_2219 | MSMEG_2217 | Identified by match to protein family HMM PF00378. | AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501. | 0.940 |
ABK70236.1 | ABK69804.1 | MSMEG_5521 | MSMEG_2219 | acetyl-CoA acetyltransferase. | Identified by match to protein family HMM PF00378. | 0.774 |
ABK70236.1 | ABK70651.1 | MSMEG_5521 | MSMEG_2220 | acetyl-CoA acetyltransferase. | enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378. | 0.708 |
ABK70236.1 | ABK72105.1 | MSMEG_5521 | MSMEG_2223 | acetyl-CoA acetyltransferase. | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.707 |
ABK70236.1 | ABK72647.1 | MSMEG_5521 | MSMEG_6795 | acetyl-CoA acetyltransferase. | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.708 |
ABK70236.1 | ABK73024.1 | MSMEG_5521 | MSMEG_2224 | acetyl-CoA acetyltransferase. | acetyl-CoA C-acyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. | 0.618 |
ABK70236.1 | ABK73865.1 | MSMEG_5521 | MSMEG_2218 | acetyl-CoA acetyltransferase. | Identified by match to protein family HMM PF00378. | 0.748 |
ABK70236.1 | ABK74471.1 | MSMEG_5521 | MSMEG_2217 | acetyl-CoA acetyltransferase. | AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501. | 0.402 |
ABK70651.1 | ABK69804.1 | MSMEG_2220 | MSMEG_2219 | enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378. | Identified by match to protein family HMM PF00378. | 0.906 |
ABK70651.1 | ABK70236.1 | MSMEG_2220 | MSMEG_5521 | enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378. | acetyl-CoA acetyltransferase. | 0.708 |
ABK70651.1 | ABK72105.1 | MSMEG_2220 | MSMEG_2223 | enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378. | Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.708 |
page 1 of 5