Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69795.1 | ABK70079.1 | MSMEG_2228 | MSMEG_2227 | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.841 |
ABK69795.1 | ABK71150.1 | MSMEG_2228 | MSMEG_2226 | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | Hypothetical protein; Identified by Glimmer2; putative. | 0.522 |
ABK69795.1 | ABK74564.1 | MSMEG_2228 | MSMEG_2225 | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440; match to protein family HMM PF02909. | 0.744 |
ABK70079.1 | ABK69795.1 | MSMEG_2227 | MSMEG_2228 | carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | 0.841 |
ABK70079.1 | ABK71150.1 | MSMEG_2227 | MSMEG_2226 | carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.535 |
ABK70079.1 | ABK74564.1 | MSMEG_2227 | MSMEG_2225 | carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440; match to protein family HMM PF02909. | 0.555 |
ABK71150.1 | ABK69795.1 | MSMEG_2226 | MSMEG_2228 | Hypothetical protein; Identified by Glimmer2; putative. | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | 0.522 |
ABK71150.1 | ABK70079.1 | MSMEG_2226 | MSMEG_2227 | Hypothetical protein; Identified by Glimmer2; putative. | carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.535 |
ABK71150.1 | ABK74564.1 | MSMEG_2226 | MSMEG_2225 | Hypothetical protein; Identified by Glimmer2; putative. | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440; match to protein family HMM PF02909. | 0.778 |
ABK74564.1 | ABK69795.1 | MSMEG_2225 | MSMEG_2228 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440; match to protein family HMM PF02909. | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | 0.744 |
ABK74564.1 | ABK70079.1 | MSMEG_2225 | MSMEG_2227 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440; match to protein family HMM PF02909. | carnitinyl-CoA dehydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.555 |
ABK74564.1 | ABK71150.1 | MSMEG_2225 | MSMEG_2226 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440; match to protein family HMM PF02909. | Hypothetical protein; Identified by Glimmer2; putative. | 0.778 |