Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK71495.1 | ABK72024.1 | MSMEG_2250 | MSMEG_2252 | Hypothetical protein; Identified by Glimmer2; putative. | Flavin-type hydroxylase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.451 |
ABK71495.1 | ABK73869.1 | MSMEG_2250 | MSMEG_2251 | Hypothetical protein; Identified by Glimmer2; putative. | Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072. | 0.584 |
ABK71495.1 | ABK75795.1 | MSMEG_2250 | MSMEG_2248 | Hypothetical protein; Identified by Glimmer2; putative. | Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229. | 0.577 |
ABK72024.1 | ABK71495.1 | MSMEG_2252 | MSMEG_2250 | Flavin-type hydroxylase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | Hypothetical protein; Identified by Glimmer2; putative. | 0.451 |
ABK72024.1 | ABK73869.1 | MSMEG_2252 | MSMEG_2251 | Flavin-type hydroxylase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072. | 0.596 |
ABK73869.1 | ABK71495.1 | MSMEG_2251 | MSMEG_2250 | Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072. | Hypothetical protein; Identified by Glimmer2; putative. | 0.584 |
ABK73869.1 | ABK72024.1 | MSMEG_2251 | MSMEG_2252 | Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072. | Flavin-type hydroxylase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.596 |
ABK73869.1 | ABK75795.1 | MSMEG_2251 | MSMEG_2248 | Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072. | Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229. | 0.859 |
ABK75795.1 | ABK71495.1 | MSMEG_2248 | MSMEG_2250 | Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229. | Hypothetical protein; Identified by Glimmer2; putative. | 0.577 |
ABK75795.1 | ABK73869.1 | MSMEG_2248 | MSMEG_2251 | Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229. | Nitrate/nitrite response regulator protein; Identified by match to protein family HMM PF00072. | 0.859 |