STRINGSTRING
ABK75553.1 ABK75553.1 fni fni ABK73942.1 ABK73942.1 ABK70459.1 ABK70459.1 ABK72140.1 ABK72140.1 ABK70097.1 ABK70097.1 ABK75535.1 ABK75535.1 ABK72779.1 ABK72779.1 ABK70364.1 ABK70364.1 sppA sppA ABK74616.1 ABK74616.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ABK75553.1Hypothetical protein; Identified by Glimmer2; putative. (169 aa)    
Predicted Functional Partners:
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
   
 0.869
ABK73942.1
GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729.
  
  
 0.852
ABK70459.1
Conserved hypothetical protein.
  
  
 0.851
ABK72140.1
Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426.
 
    0.833
ABK70097.1
Haloacetate dehalogenase H-1; Identified by match to protein family HMM PF00561.
  
  
 0.823
ABK75535.1
RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
  
  
 0.817
ABK72779.1
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the WXG100 family.
   
  
 0.816
ABK70364.1
1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.
  
  
 0.800
sppA
Signal peptide peptidase SppA, 67K type; Identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706.
  
  
 0.793
ABK74616.1
Cyclopropane-fatty-acyl-phospholipid synthase; Identified by match to protein family HMM PF02353.
  
  
 0.762
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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