Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69642.1 | ABK70607.1 | MSMEG_0968 | MSMEG_5354 | Cytochrome P450; Identified by match to protein family HMM PF00067. | Identified by match to protein family HMM PF00891. | 0.433 |
| ABK69642.1 | ABK72140.1 | MSMEG_0968 | MSMEG_2342 | Cytochrome P450; Identified by match to protein family HMM PF00067. | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | 0.489 |
| ABK69642.1 | ABK75015.1 | MSMEG_0968 | MSMEG_0730 | Cytochrome P450; Identified by match to protein family HMM PF00067. | Oleandomycin glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM TIGR01426. | 0.414 |
| ABK69642.1 | pks5 | MSMEG_0968 | MSMEG_4727 | Cytochrome P450; Identified by match to protein family HMM PF00067. | Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis. | 0.689 |
| ABK70280.1 | ABK72140.1 | MSMEG_6478 | MSMEG_2342 | Putative cytochrome P450 135B1; Identified by match to protein family HMM PF00067. | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | 0.485 |
| ABK70280.1 | ABK75015.1 | MSMEG_6478 | MSMEG_0730 | Putative cytochrome P450 135B1; Identified by match to protein family HMM PF00067. | Oleandomycin glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM TIGR01426. | 0.416 |
| ABK70280.1 | pks5 | MSMEG_6478 | MSMEG_4727 | Putative cytochrome P450 135B1; Identified by match to protein family HMM PF00067. | Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis. | 0.683 |
| ABK70607.1 | ABK69642.1 | MSMEG_5354 | MSMEG_0968 | Identified by match to protein family HMM PF00891. | Cytochrome P450; Identified by match to protein family HMM PF00067. | 0.433 |
| ABK70607.1 | ABK72140.1 | MSMEG_5354 | MSMEG_2342 | Identified by match to protein family HMM PF00891. | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | 0.547 |
| ABK72108.1 | ABK72140.1 | MSMEG_3484 | MSMEG_2342 | Cupin domain protein; Identified by match to protein family HMM PF07883. | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | 0.613 |
| ABK72108.1 | ABK74743.1 | MSMEG_3484 | MSMEG_6625 | Cupin domain protein; Identified by match to protein family HMM PF07883. | Identified by match to protein family HMM PF00903. | 0.501 |
| ABK72108.1 | ABK75647.1 | MSMEG_3484 | MSMEG_4156 | Cupin domain protein; Identified by match to protein family HMM PF07883. | Putative transposase; Identified by match to protein family HMM PF00589. | 0.656 |
| ABK72140.1 | ABK69642.1 | MSMEG_2342 | MSMEG_0968 | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | Cytochrome P450; Identified by match to protein family HMM PF00067. | 0.489 |
| ABK72140.1 | ABK70280.1 | MSMEG_2342 | MSMEG_6478 | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | Putative cytochrome P450 135B1; Identified by match to protein family HMM PF00067. | 0.485 |
| ABK72140.1 | ABK70607.1 | MSMEG_2342 | MSMEG_5354 | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | Identified by match to protein family HMM PF00891. | 0.547 |
| ABK72140.1 | ABK72108.1 | MSMEG_2342 | MSMEG_3484 | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | Cupin domain protein; Identified by match to protein family HMM PF07883. | 0.613 |
| ABK72140.1 | ABK74743.1 | MSMEG_2342 | MSMEG_6625 | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | Identified by match to protein family HMM PF00903. | 0.506 |
| ABK72140.1 | ABK75015.1 | MSMEG_2342 | MSMEG_0730 | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | Oleandomycin glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM TIGR01426. | 0.676 |
| ABK72140.1 | ABK75294.1 | MSMEG_2342 | MSMEG_2339 | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | IS1096, tnpA protein; Identified by similarity to GP:150005; match to protein family HMM PF01610. | 0.579 |
| ABK72140.1 | ABK75553.1 | MSMEG_2342 | MSMEG_2340 | Putative glycosyltransferase; Identified by match to protein family HMM PF00201; match to protein family HMM PF03033; match to protein family HMM TIGR01426. | Hypothetical protein; Identified by Glimmer2; putative. | 0.833 |
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