Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69953.1 | ABK74662.1 | MSMEG_2404 | MSMEG_2402 | Extracellular deoxyribonuclease. | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | 0.833 |
| ABK69953.1 | ABK75857.1 | MSMEG_2404 | MSMEG_2401 | Extracellular deoxyribonuclease. | Hypothetical protein; Identified by Glimmer2; putative. | 0.465 |
| ABK69953.1 | recG | MSMEG_2404 | MSMEG_2403 | Extracellular deoxyribonuclease. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.882 |
| ABK69953.1 | thiL | MSMEG_2404 | MSMEG_2398 | Extracellular deoxyribonuclease. | Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.474 |
| ABK69953.1 | ung | MSMEG_2404 | MSMEG_2399 | Extracellular deoxyribonuclease. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.491 |
| ABK70787.1 | ABK74662.1 | MSMEG_1686 | MSMEG_2402 | Identified by match to protein family HMM PF00877. | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | 0.463 |
| ABK72765.1 | ABK74662.1 | MSMEG_2451 | MSMEG_2402 | HAD-superfamily protein hydrolase, subfamily protein IIA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; Belongs to the HAD-like hydrolase superfamily. | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | 0.738 |
| ABK73241.1 | ABK74662.1 | MSMEG_2396 | MSMEG_2402 | Conserved hypothetical protein. | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | 0.537 |
| ABK73241.1 | ABK75857.1 | MSMEG_2396 | MSMEG_2401 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.464 |
| ABK73241.1 | recG | MSMEG_2396 | MSMEG_2403 | Conserved hypothetical protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.473 |
| ABK73241.1 | thiL | MSMEG_2396 | MSMEG_2398 | Conserved hypothetical protein. | Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.641 |
| ABK73241.1 | ung | MSMEG_2396 | MSMEG_2399 | Conserved hypothetical protein. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.606 |
| ABK74624.1 | ABK74662.1 | MSMEG_4577 | MSMEG_2402 | Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762. | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | 0.949 |
| ABK74662.1 | ABK69953.1 | MSMEG_2402 | MSMEG_2404 | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | Extracellular deoxyribonuclease. | 0.833 |
| ABK74662.1 | ABK70787.1 | MSMEG_2402 | MSMEG_1686 | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | Identified by match to protein family HMM PF00877. | 0.463 |
| ABK74662.1 | ABK72765.1 | MSMEG_2402 | MSMEG_2451 | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | HAD-superfamily protein hydrolase, subfamily protein IIA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; Belongs to the HAD-like hydrolase superfamily. | 0.738 |
| ABK74662.1 | ABK73241.1 | MSMEG_2402 | MSMEG_2396 | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | Conserved hypothetical protein. | 0.537 |
| ABK74662.1 | ABK74624.1 | MSMEG_2402 | MSMEG_4577 | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762. | 0.949 |
| ABK74662.1 | ABK75857.1 | MSMEG_2402 | MSMEG_2401 | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | Hypothetical protein; Identified by Glimmer2; putative. | 0.461 |
| ABK74662.1 | pknB | MSMEG_2402 | MSMEG_0028 | Dihydroxyacetone kinase; Identified by match to protein family HMM PF02734. | Serine-threonine protein kinase; Protein kinase that regulates many aspects of mycobacterial physiology. Is a key component of a signal transduction pathway that regulates cell growth, cell shape and cell division via phosphorylation of target proteins (By similarity). Probably phosphorylates RseA. | 0.465 |
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