ABK75390.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK75390.1

DNA-binding protein. (281 aa)

Predicted Functional Partners:

ABK76092.1

0.569

ABK75346.1

0.492

ffh

0.449

ABK73228.1

0.429

ABK71120.1

0.428

ABK71246.1

0.426

ABK71541.1

0.417

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71120.1	ABK75390.1	MSMEG_3192	MSMEG_2428	Conserved hypothetical protein, putative; Identified by match to protein family HMM TIGR03083.	DNA-binding protein.	0.428
ABK71246.1	ABK75390.1	MSMEG_2431	MSMEG_2428	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	DNA-binding protein.	0.426
ABK71246.1	ABK76092.1	MSMEG_2431	MSMEG_2429	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	Aldo/keto reductase; Identified by match to protein family HMM PF00248.	0.593
ABK71246.1	ffh	MSMEG_2431	MSMEG_2430	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.896
ABK71541.1	ABK75390.1	MSMEG_3436	MSMEG_2428	Conserved hypothetical protein.	DNA-binding protein.	0.417
ABK73228.1	ABK75390.1	MSMEG_0682	MSMEG_2428	Conserved hypothetical protein, putative; Identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083.	DNA-binding protein.	0.429
ABK75346.1	ABK75390.1	MSMEG_0441	MSMEG_2428	Conserved hypothetical protein, putative; Identified by match to protein family HMM TIGR03083.	DNA-binding protein.	0.492
ABK75390.1	ABK71120.1	MSMEG_2428	MSMEG_3192	DNA-binding protein.	Conserved hypothetical protein, putative; Identified by match to protein family HMM TIGR03083.	0.428
ABK75390.1	ABK71246.1	MSMEG_2428	MSMEG_2431	DNA-binding protein.	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	0.426
ABK75390.1	ABK71541.1	MSMEG_2428	MSMEG_3436	DNA-binding protein.	Conserved hypothetical protein.	0.417
ABK75390.1	ABK73228.1	MSMEG_2428	MSMEG_0682	DNA-binding protein.	Conserved hypothetical protein, putative; Identified by match to protein family HMM PF07398; match to protein family HMM TIGR03083.	0.429
ABK75390.1	ABK75346.1	MSMEG_2428	MSMEG_0441	DNA-binding protein.	Conserved hypothetical protein, putative; Identified by match to protein family HMM TIGR03083.	0.492
ABK75390.1	ABK76092.1	MSMEG_2428	MSMEG_2429	DNA-binding protein.	Aldo/keto reductase; Identified by match to protein family HMM PF00248.	0.569
ABK75390.1	ffh	MSMEG_2428	MSMEG_2430	DNA-binding protein.	Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.449
ABK76092.1	ABK71246.1	MSMEG_2429	MSMEG_2431	Aldo/keto reductase; Identified by match to protein family HMM PF00248.	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	0.593
ABK76092.1	ABK75390.1	MSMEG_2429	MSMEG_2428	Aldo/keto reductase; Identified by match to protein family HMM PF00248.	DNA-binding protein.	0.569
ABK76092.1	ffh	MSMEG_2429	MSMEG_2430	Aldo/keto reductase; Identified by match to protein family HMM PF00248.	Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.587
ffh	ABK71246.1	MSMEG_2430	MSMEG_2431	Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	Amidohydrolase 3; Identified by match to protein family HMM PF01979.	0.896
ffh	ABK75390.1	MSMEG_2430	MSMEG_2428	Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	DNA-binding protein.	0.449
ffh	ABK76092.1	MSMEG_2430	MSMEG_2429	Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.	Aldo/keto reductase; Identified by match to protein family HMM PF00248.	0.587