Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK71246.1 | ABK71454.1 | MSMEG_2431 | MSMEG_2064 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Two-component system response regulator. | 0.575 |
| ABK71246.1 | ABK71810.1 | MSMEG_2431 | MSMEG_4392 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979. | 0.668 |
| ABK71246.1 | ABK72819.1 | MSMEG_2431 | MSMEG_6139 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00440. | 0.676 |
| ABK71246.1 | ABK73064.1 | MSMEG_2431 | MSMEG_3861 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Amidohydrolase 3; Identified by match to protein family HMM PF07969. | 0.623 |
| ABK71246.1 | ABK76092.1 | MSMEG_2431 | MSMEG_2429 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Aldo/keto reductase; Identified by match to protein family HMM PF00248. | 0.593 |
| ABK71246.1 | ffh | MSMEG_2431 | MSMEG_2430 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.896 |
| ABK71246.1 | hutH | MSMEG_2431 | MSMEG_1183 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Histidine ammonia-lyase; Identified by similarity to EGAD:14121; match to protein family HMM PF00221; match to protein family HMM TIGR01225. | 0.635 |
| ABK71246.1 | hutU | MSMEG_2431 | MSMEG_1179 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.636 |
| ABK71246.1 | nuoG | MSMEG_2431 | MSMEG_2057 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | NADH-quinone oxidoreductase, G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.520 |
| ABK71246.1 | speB | MSMEG_2431 | MSMEG_1072 | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family. | 0.429 |
| ABK71454.1 | ABK71246.1 | MSMEG_2064 | MSMEG_2431 | Two-component system response regulator. | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | 0.575 |
| ABK71454.1 | nuoG | MSMEG_2064 | MSMEG_2057 | Two-component system response regulator. | NADH-quinone oxidoreductase, G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. | 0.985 |
| ABK71810.1 | ABK71246.1 | MSMEG_4392 | MSMEG_2431 | Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979. | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | 0.668 |
| ABK71810.1 | hutH | MSMEG_4392 | MSMEG_1183 | Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979. | Histidine ammonia-lyase; Identified by similarity to EGAD:14121; match to protein family HMM PF00221; match to protein family HMM TIGR01225. | 0.636 |
| ABK71810.1 | hutU | MSMEG_4392 | MSMEG_1179 | Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.811 |
| ABK71810.1 | speB | MSMEG_4392 | MSMEG_1072 | Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979. | Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family. | 0.432 |
| ABK72819.1 | ABK71246.1 | MSMEG_6139 | MSMEG_2431 | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00440. | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | 0.676 |
| ABK73064.1 | ABK71246.1 | MSMEG_3861 | MSMEG_2431 | Amidohydrolase 3; Identified by match to protein family HMM PF07969. | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | 0.623 |
| ABK76092.1 | ABK71246.1 | MSMEG_2429 | MSMEG_2431 | Aldo/keto reductase; Identified by match to protein family HMM PF00248. | Amidohydrolase 3; Identified by match to protein family HMM PF01979. | 0.593 |
| ABK76092.1 | ffh | MSMEG_2429 | MSMEG_2430 | Aldo/keto reductase; Identified by match to protein family HMM PF00248. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.587 |
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