ABK69837.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK69837.1

acyl-CoA thioesterase; Identified by match to protein family HMM PF02551. (269 aa)

Predicted Functional Partners:

ABK69766.1

0.835

ABK70553.1

0.775

ABK70730.1

0.761

ABK69754.1

0.757

ABK72733.1

0.554

ABK76148.1

0.536

ABK71421.1

0.518

ABK74895.1

0.511

ABK74591.1

0.479

ABK75186.1

0.470

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69754.1	ABK69766.1	MSMEG_2466	MSMEG_2468	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.730
ABK69754.1	ABK69837.1	MSMEG_2466	MSMEG_2470	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	0.757
ABK69754.1	ABK70730.1	MSMEG_2466	MSMEG_2467	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.	0.785
ABK69754.1	ABK71421.1	MSMEG_2466	MSMEG_1331	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.847
ABK69754.1	ABK72733.1	MSMEG_2466	MSMEG_0102	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	0.669
ABK69754.1	ABK74591.1	MSMEG_2466	MSMEG_0157	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	oxalyl-CoA decarboxylase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.465
ABK69754.1	ABK75186.1	MSMEG_2466	MSMEG_5297	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	oxalyl-CoA decarboxylase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.466
ABK69754.1	ABK76148.1	MSMEG_2466	MSMEG_2465	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Adenine deaminase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.	0.671
ABK69766.1	ABK69754.1	MSMEG_2468	MSMEG_2466	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.730
ABK69766.1	ABK69837.1	MSMEG_2468	MSMEG_2470	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	0.835
ABK69766.1	ABK70730.1	MSMEG_2468	MSMEG_2467	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.	0.800
ABK69766.1	ABK76148.1	MSMEG_2468	MSMEG_2465	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	Adenine deaminase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.	0.546
ABK69837.1	ABK69754.1	MSMEG_2470	MSMEG_2466	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.757
ABK69837.1	ABK69766.1	MSMEG_2470	MSMEG_2468	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.835
ABK69837.1	ABK70553.1	MSMEG_2470	MSMEG_2997	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	Conserved hypothetical protein.	0.775
ABK69837.1	ABK70730.1	MSMEG_2470	MSMEG_2467	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	Transketolase, central region; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM PF02780.	0.761
ABK69837.1	ABK71421.1	MSMEG_2470	MSMEG_1331	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.518
ABK69837.1	ABK72733.1	MSMEG_2470	MSMEG_0102	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	0.554
ABK69837.1	ABK74591.1	MSMEG_2470	MSMEG_0157	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	oxalyl-CoA decarboxylase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.479
ABK69837.1	ABK74895.1	MSMEG_2470	MSMEG_1387	acyl-CoA thioesterase; Identified by match to protein family HMM PF02551.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	0.511