STRINGSTRING
ABK71459.1 ABK71459.1 ABK72398.1 ABK72398.1 ABK74292.1 ABK74292.1 ABK74718.1 ABK74718.1 ABK69534.1 ABK69534.1 ABK73100.1 ABK73100.1 ABK74540.1 ABK74540.1 ABK71774.1 ABK71774.1 ABK73097.1 ABK73097.1 pks pks polA polA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71459.1Cytochrome P450 superfamily protein; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family. (412 aa)    
Predicted Functional Partners:
ABK72398.1
Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
  
 0.950
ABK74292.1
Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107.
 
  
 0.909
ABK74718.1
4-hydroxy-2-oxovalerate aldolase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.
  
    0.896
ABK69534.1
Conserved hypothetical protein.
  
    0.893
ABK73100.1
3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase; Identified by match to protein family HMM PF00106.
  
   0.884
ABK74540.1
LipW protein; Identified by match to protein family HMM PF07859.
  
 
 0.880
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 0.870
ABK73097.1
Probable monooxygenase.
  
 
 0.791
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
 
 0.710
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.705
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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