STRINGSTRING
ABK70110.1 ABK70110.1 ABK75074.1 ABK75074.1 ABK75942.1 ABK75942.1 ABK73621.1 ABK73621.1 ABK69679.1 ABK69679.1 ABK74914.1 ABK74914.1 ctaD ctaD ABK73349.1 ABK73349.1 ABK70164.1 ABK70164.1 ABK72145.1 ABK72145.1 sodC sodC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK70110.1Conserved hypothetical protein. (84 aa)    
Predicted Functional Partners:
ABK75074.1
Ubiquinol-cytochrome c reductase cytochrome c subunit; Identified by match to protein family HMM PF00034.
   
   0.999
ABK75942.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Identified by match to protein family HMM PF00355.
   
   0.999
ABK73621.1
Ubiquinol-cytochrome c reductase cytochrome b subunit; Identified by match to protein family HMM PF00033.
   
   0.999
ABK69679.1
Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
   
   0.999
ABK74914.1
Cytochrome c oxidase subunit 2; Identified by match to protein family HMM PF00116.
   
   0.999
ctaD
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
   
   0.999
ABK73349.1
Conserved hypothetical protein.
  
   0.959
ABK70164.1
LpqE protein.
  
   0.959
ABK72145.1
Conserved hypothetical protein.
  
   0.958
sodC
Copper/zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
   0.924
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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