cbiQ protein (Mycolicibacterium smegmatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cbiQ

Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454. (259 aa)

Predicted Functional Partners:

cbiM

0.999

ABK74519.1

0.999

ABK72168.1

0.996

ABK70540.1

0.627

ABK70693.1

0.619

ABK72543.1

0.619

ABK76043.1

0.618

oppD

0.618

ABK73121.1

0.617

ABK71582.1

0.617

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70540.1	ABK72168.1	MSMEG_2606	MSMEG_2608	ArsR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF07848.	Cobalt transport protein CbiM.	0.611
ABK70540.1	ABK74519.1	MSMEG_2606	MSMEG_2610	ArsR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF07848.	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	0.578
ABK70540.1	cbiM	MSMEG_2606	MSMEG_2607	ArsR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF07848.	Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.	0.611
ABK70540.1	cbiQ	MSMEG_2606	MSMEG_2609	ArsR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF07848.	Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.	0.627
ABK70693.1	ABK74519.1	MSMEG_4388	MSMEG_2610	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	0.438
ABK70693.1	cbiQ	MSMEG_4388	MSMEG_2609	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.	0.619
ABK71582.1	ABK74519.1	MSMEG_6725	MSMEG_2610	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	0.472
ABK71582.1	cbiQ	MSMEG_6725	MSMEG_2609	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.	0.617
ABK72168.1	ABK70540.1	MSMEG_2608	MSMEG_2606	Cobalt transport protein CbiM.	ArsR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF07848.	0.611
ABK72168.1	ABK74519.1	MSMEG_2608	MSMEG_2610	Cobalt transport protein CbiM.	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	0.996
ABK72168.1	cbiM	MSMEG_2608	MSMEG_2607	Cobalt transport protein CbiM.	Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.	0.987
ABK72168.1	cbiQ	MSMEG_2608	MSMEG_2609	Cobalt transport protein CbiM.	Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.	0.996
ABK72543.1	ABK74519.1	MSMEG_4541	MSMEG_2610	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	0.438
ABK72543.1	cbiQ	MSMEG_4541	MSMEG_2609	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.	0.619
ABK73121.1	ABK74519.1	MSMEG_2844	MSMEG_2610	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	0.435
ABK73121.1	cbiQ	MSMEG_2844	MSMEG_2609	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.	0.617
ABK74519.1	ABK70540.1	MSMEG_2610	MSMEG_2606	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	ArsR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF07848.	0.578
ABK74519.1	ABK70693.1	MSMEG_2610	MSMEG_4388	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.438
ABK74519.1	ABK71582.1	MSMEG_2610	MSMEG_6725	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.472
ABK74519.1	ABK72168.1	MSMEG_2610	MSMEG_2608	Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005.	Cobalt transport protein CbiM.	0.996

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About