STRINGSTRING
ABK74519.1 ABK74519.1 cbiQ cbiQ cbiM cbiM ABK72168.1 ABK72168.1 ABK69536.1 ABK69536.1 ABK74483.1 ABK74483.1 ABK72513.1 ABK72513.1 truA truA ABK70540.1 ABK70540.1 rpsK rpsK cobL cobL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK74519.1Cobalt transport protein ATP-binding subunit; Identified by match to protein family HMM PF00005. (249 aa)    
Predicted Functional Partners:
cbiQ
Cobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.
 0.999
cbiM
Cobalamin biosynthesis protein CbiM; Identified by match to protein family HMM PF01891.
 
 0.997
ABK72168.1
Cobalt transport protein CbiM.
 
 0.996
ABK69536.1
ABC-type cobalt transport system; Identified by match to protein family HMM PF02361.
 
 
 0.957
ABK74483.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
 
 0.896
ABK72513.1
Cobalamin biosynthesis protein cobIJ; Identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; match to protein family HMM TIGR01467; Belongs to the precorrin methyltransferase family.
  
  
 0.672
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.639
ABK70540.1
ArsR-family protein transcriptional regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF07848.
  
  
 0.578
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
  
 0.571
cobL
precorrin-6Y C5,15-methyltransferase (decarboxylating); Identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.
  
  
 0.561
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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