STRINGSTRING
ABK71406.1 ABK71406.1 ABK69888.1 ABK69888.1 hypF-2 hypF-2 ABK69753.1 ABK69753.1 hypC-3 hypC-3 hypE-2 hypE-2 gmhA gmhA ABK74203.1 ABK74203.1 ABK74215.1 ABK74215.1 ABK71076.1 ABK71076.1 ABK71232.1 ABK71232.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71406.1Hypothetical protein; Identified by Glimmer2; putative. (63 aa)    
Predicted Functional Partners:
ABK69888.1
Peptidase M52, hydrogen uptake protein; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072.
  
    0.788
hypF-2
[NiFe] hydrogenase maturation protein HypF; Identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143.
  
    0.781
ABK69753.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.779
hypC-3
Hydrogenase assembly chaperone HypC/HupF; Identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074.
  
    0.779
hypE-2
Hydrogenase expression/formation protein HypE; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124.
  
    0.778
gmhA
Phosphoheptose isomerase.
  
    0.776
ABK74203.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.776
ABK74215.1
Conserved hypothetical protein.
  
    0.511
ABK71076.1
Conserved hypothetical protein.
  
    0.511
ABK71232.1
Conserved hypothetical protein.
  
    0.511
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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