STRINGSTRING
ABK72160.1 ABK72160.1 rbpA rbpA ABK72472.1 ABK72472.1 ABK73069.1 ABK73069.1 ABK73778.1 ABK73778.1 ABK72219.1 ABK72219.1 ABK70869.1 ABK70869.1 ABK75909.1 ABK75909.1 ABK72286.1 ABK72286.1 ABK69918.1 ABK69918.1 ABK70495.1 ABK70495.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72160.1Conserved hypothetical protein. (78 aa)    
Predicted Functional Partners:
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), probably stimulating transcriptions from principal, but not alternative sigma factor promoters (By similarity). Partially restores transcription in the presence of rifampicin (Rif) in vitro; overexpression leads to an increase in the Rif tolerance in vivo, with smaller colonies. Seems to act by removing Rif from its binding site and preventing its further binding. No longer stimulates transcription in Rif-resistant RNA polymerase (with mutations in rpoB).
  
    0.773
ABK72472.1
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144.
  
    0.772
ABK73069.1
Integral membrane protein.
  
    0.770
ABK73778.1
Conserved hypothetical protein.
  
    0.760
ABK72219.1
Conserved hypothetical protein.
  
    0.747
ABK70869.1
Conserved hypothetical protein.
 
    0.738
ABK75909.1
Integral membrane protein.
  
     0.735
ABK72286.1
ATPase involved in DNA repair; Identified by match to protein family HMM PF03993.
  
    0.730
ABK69918.1
Conserved hypothetical protein.
  
    0.729
ABK70495.1
Conserved hypothetical protein.
 
    0.727
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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