Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70449.1 | ABK70843.1 | MSMEG_2889 | MSMEG_2886 | NADH:flavin oxidoreductase/nadh oxidase; Identified by match to protein family HMM PF00724. | Stress responsive A/B Barrel Domain family protein; Identified by match to protein family HMM PF07876. | 0.578 |
ABK70449.1 | ABK72698.1 | MSMEG_2889 | MSMEG_2887 | NADH:flavin oxidoreductase/nadh oxidase; Identified by match to protein family HMM PF00724. | Conserved hypothetical protein. | 0.579 |
ABK70843.1 | ABK70449.1 | MSMEG_2886 | MSMEG_2889 | Stress responsive A/B Barrel Domain family protein; Identified by match to protein family HMM PF07876. | NADH:flavin oxidoreductase/nadh oxidase; Identified by match to protein family HMM PF00724. | 0.578 |
ABK70843.1 | ABK72698.1 | MSMEG_2886 | MSMEG_2887 | Stress responsive A/B Barrel Domain family protein; Identified by match to protein family HMM PF07876. | Conserved hypothetical protein. | 0.896 |
ABK71075.1 | ABK72698.1 | MSMEG_2891 | MSMEG_2887 | Biphenyl-2,3-diol 1,2-dioxygenase 1; Identified by match to protein family HMM PF00903. | Conserved hypothetical protein. | 0.405 |
ABK72698.1 | ABK70449.1 | MSMEG_2887 | MSMEG_2889 | Conserved hypothetical protein. | NADH:flavin oxidoreductase/nadh oxidase; Identified by match to protein family HMM PF00724. | 0.579 |
ABK72698.1 | ABK70843.1 | MSMEG_2887 | MSMEG_2886 | Conserved hypothetical protein. | Stress responsive A/B Barrel Domain family protein; Identified by match to protein family HMM PF07876. | 0.896 |
ABK72698.1 | ABK71075.1 | MSMEG_2887 | MSMEG_2891 | Conserved hypothetical protein. | Biphenyl-2,3-diol 1,2-dioxygenase 1; Identified by match to protein family HMM PF00903. | 0.405 |