STRINGSTRING
ABK69867.1 ABK69867.1 ABK74219.1 ABK74219.1 ABK74116.1 ABK74116.1 ABK75211.1 ABK75211.1 ABK71774.1 ABK71774.1 pks pks ABK70602.1 ABK70602.1 ABK72155.1 ABK72155.1 pks5 pks5 ABK70529.1 ABK70529.1 ABK71230.1 ABK71230.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK69867.1Lipase; Identified by match to protein family HMM PF07859. (316 aa)    
Predicted Functional Partners:
ABK74219.1
Esterase; Identified by match to protein family HMM PF07859.
  
  
 0.787
ABK74116.1
Putative transcriptional regulator; Identified by match to protein family HMM PF01614.
  
    0.786
ABK75211.1
Conserved hypothetical protein.
   
 0.589
ABK71774.1
Polyketide synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.547
pks
Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.
  
 
 0.541
ABK70602.1
Peptidase, S9A/B/C families; Identified by match to protein family HMM PF00326; match to protein family HMM PF07859.
  
  
 0.538
ABK72155.1
Oxidoreductase, NAD/FAD-binding; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970.
  
   0.527
pks5
Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.
  
 
 0.512
ABK70529.1
Mycocerosic acid synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.
  
 
 0.504
ABK71230.1
Steroid monooxygenase; Identified by match to protein family HMM PF01266.
  
 0.500
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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