ABK72852.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK72852.1

ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005. (230 aa)

Predicted Functional Partners:

ABK73761.1

0.995

ABK75980.1

0.994

ABK75630.1

0.992

ABK73199.1

0.979

ABK70256.1

0.902

ABK72452.1

0.886

ABK75324.1

0.884

ABK72210.1

0.878

ABK73482.1

0.868

ABK72013.1

0.847

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70256.1	ABK72013.1	MSMEG_1219	MSMEG_6880	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	0.976
ABK70256.1	ABK72210.1	MSMEG_1219	MSMEG_6878	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	Inner-membrane translocator; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.928
ABK70256.1	ABK72452.1	MSMEG_1219	MSMEG_3249	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.928
ABK70256.1	ABK72852.1	MSMEG_1219	MSMEG_2978	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.902
ABK70256.1	ABK73199.1	MSMEG_1219	MSMEG_2979	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.899
ABK70256.1	ABK73482.1	MSMEG_1219	MSMEG_6879	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	Integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.977
ABK70256.1	ABK75324.1	MSMEG_1219	MSMEG_1220	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	ABC-type transport system permease protein I; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.996
ABK70256.1	ABK75630.1	MSMEG_1219	MSMEG_2982	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	Putative periplasmic binding protein; Identified by match to protein family HMM PF01094.	0.811
ABK70256.1	ABK75980.1	MSMEG_1219	MSMEG_2981	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	Branched-chain amino acid ABC-type transport system, permease component; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.972
ABK72013.1	ABK70256.1	MSMEG_6880	MSMEG_1219	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.976
ABK72013.1	ABK72210.1	MSMEG_6880	MSMEG_6878	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	Inner-membrane translocator; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.992
ABK72013.1	ABK72452.1	MSMEG_6880	MSMEG_3249	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.975
ABK72013.1	ABK72852.1	MSMEG_6880	MSMEG_2978	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.847
ABK72013.1	ABK73199.1	MSMEG_6880	MSMEG_2979	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.733
ABK72013.1	ABK73482.1	MSMEG_6880	MSMEG_6879	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	Integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.992
ABK72013.1	ABK73761.1	MSMEG_6880	MSMEG_2980	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	Putative membrane protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.844
ABK72013.1	ABK75324.1	MSMEG_6880	MSMEG_1220	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	ABC-type transport system permease protein I; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.976
ABK72013.1	ABK75980.1	MSMEG_6880	MSMEG_2981	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	Branched-chain amino acid ABC-type transport system, permease component; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.879
ABK72210.1	ABK70256.1	MSMEG_6878	MSMEG_1219	Inner-membrane translocator; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	ABC-type transport system permease protein II; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.928
ABK72210.1	ABK72013.1	MSMEG_6878	MSMEG_6880	Inner-membrane translocator; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094.	0.992