STRINGSTRING
ABK75826.1 ABK75826.1 ABK74369.1 ABK74369.1 ABK71173.1 ABK71173.1 ABK71701.1 ABK71701.1 ABK75734.1 ABK75734.1 ABK75852.1 ABK75852.1 ABK69622.1 ABK69622.1 ABK71335.1 ABK71335.1 ABK75706.1 ABK75706.1 ligD-2 ligD-2 ABK73453.1 ABK73453.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75826.1Conserved hypothetical protein; Identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174. (904 aa)    
Predicted Functional Partners:
ABK74369.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01841.
 
  
 0.988
ABK71173.1
Transglutaminase domain protein; Identified by match to protein family HMM PF01841.
 
  
 0.976
ABK71701.1
Conserved hypothetical protein.
 
    0.935
ABK75734.1
Conserved hypothetical protein; Identified by similarity to GP:22294891; match to protein family HMM PF04168.
 
  
 0.912
ABK75852.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01841.
 
  
 0.898
ABK69622.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04169; match to protein family HMM PF04174.
 
  
0.699
ABK71335.1
Conserved hypothetical protein.
  
    0.546
ABK75706.1
AAA ATPase, central region; Identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF07728.
  
    0.501
ligD-2
DNA ligase; With Ku forms a non-homologous end joining (NHEJ) repair enzyme which repairs blunt-end and 5'-overhang DNA double strand breaks (DSB) with about 50% fidelity, and DSB with non-complementary 3' ends. Plays a partial role in NHEJ during 3'-overhang repair. NHEJ repairs DSB with blunt ends and 5' overhangs with a high level of nucleotide insertion/deletion, without a need for microhomology. Acts as a DNA ligase on singly nicked dsDNA, as a DNA-directed DNA polymerase on 5' overhangs, and adds non-templated nucleotides to 3' overhangs (terminal transferase). Fills in gaps in d [...]
  
    0.496
ABK73453.1
Conserved hypothetical protein.
  
    0.478
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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